Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2619 ATGGCTACTGCTGCTGCAGGCATAGCCTCATTGTTTTCATCTTCCATCAACACTGTCAAATGTCTCCGTTCCAAAAACTGCATGTTTGCACCATCTTCTATGTCACAATTCTCTTATTCTTACTCACTTGAACCTTTATCCATTGGCACAACAATCTCATCATACAAGTTATGGATGCCTAGAATTTCAGCTGCTGTTGCACAGGAAGAAGCTATTGTTGCTCCTGCTGAAGAGGAGGTTGTGGTTGAGGAGGAAGTAAAAGAAGGAGAAGAAAAAGTGTATACTACGACTAAGCTTTATTTTGGTAATTTACCTTATGGTGTTGATAGTGCACAACTTGCAGGGTTAATTGAAGAATATGGTAGTGCAGAACTAATTGAGGTTCTTTATGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTCACAATGAGTTGTATTGAAGATTGTAATGCAGTGATCAAAAATCTTGATAAAAAAGAGTTCATGGGGCGATTCTTGCGGGTGAACTTCTCGGACAAACCGAAAGCAAAAGTACCATTGTACCCTGAAACTGAGTACAAACTTTTTGTTGGGAACTTGTCTTGGAGTGTAACTTCTGAGATTCTTACACAAGCCTTTCAAAAACATGGAACTGTGGTTGGAGCTAGGGTGTTATATGATGGCGAAACTGGAAGGTCCCGTGGTTATGGCTTTGTTTCTTACGCCAGTAAATCAGAAATGGAAGCTGCCCTTACAGACATGGATAATGTGGAACTAGAAGGACGAACATTGCGTGTAAGCTTGGCTCAAGGAAAACGTGCAGAAGGTTGA 816 0.4093 MATAAAGIASLFSSSINTVKCLRSKNCMFAPSSMSQFSYSYSLEPLSIGTTISSYKLWMPRISAAVAQEEAIVAPAEEEVVVEEEVKEGEEKVYTTTKLYFGNLPYGVDSAQLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIKNLDKKEFMGRFLRVNFSDKPKAKVPLYPETEYKLFVGNLSWSVTSEILTQAFQKHGTVVGARVLYDGETGRSRGYGFVSYASKSEMEAALTDMDNVELEGRTLRVSLAQGKRAEG* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2619 271 Gene3D - 178 271 IPR012677 -
Tpr1g2619 271 PANTHER OS02G0815200 PROTEIN 5 269 - -
Tpr1g2619 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Tpr1g2619 271 SMART rrm1_1 98 171 IPR000504 GO:0003723
Tpr1g2619 271 SMART rrm1_1 189 262 IPR000504 GO:0003723
Tpr1g2619 271 Gene3D - 64 177 IPR012677 -
Tpr1g2619 271 SUPERFAMILY RNA-binding domain, RBD 181 268 IPR035979 GO:0003676
Tpr1g2619 271 PANTHER OS02G0815200 PROTEIN 5 269 - -
Tpr1g2619 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
Tpr1g2619 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 260 IPR000504 GO:0003723
Tpr1g2619 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 266 IPR000504 GO:0003723
Tpr1g2619 271 SUPERFAMILY RNA-binding domain, RBD 87 179 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2619 Tpr-Chr1 29889972 29892774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2619 97 267 Eukaryotic Initiation Factors Gene Family AT4G34110 29.570 2.65e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2619 - - gmx:100820203 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2619 1 29889972 29892774 Tpr1g2619 1 29889972 29892774 ECH
Tpr6g0659 6 5376198 5378417 Tpr1g2619 1 29889972 29892774 PCT