Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2617 ATGTCGCTGCCGGAATGCTCAGTGGAGCAACTAACACAGTTCATCGGCCCAAACGCAACAAACGCAGAAGCTGCCGCTCAGTTCATCTGCAGCCAGTTCTCCGCGGTGGGAAATAAGTTCATAGACACACAATTCGCGGTGGACAACACTTACCTTCTATTTTCAGCTTATCTTGTTTTCTCTATGCAACTTGGTTTTGCTATGCTCTGTGCCGGTTCAGTTCGAGCCAAAAACACCATGAACATCATGCTCACAAACGTTCTTGACGCCGCCGCCGGTGGTCTTTTCTACTATCTCTTCGGTTTCGCCTTTGCTTTCGGCGGACCCTCCAACGGCTTCATCGGAAAACATTTCTTCGGTCTTAAAGACGTTCCAACCGAAGCTTTTGATTACAGTTATTTTCTCTATCAATGGGCTTTTGCCATAGCAGCCGCTGGCATCACCAGCGGCTCAATCGCGGAACGAACTCAGTTCGTTGCGTATCTTATTTACTCTTCTTTCCTCACAGGATTTGTTTACCCTGTAGTTTCTCATTGGTTCTGGTCCGGTGATGGTTGGGCTAGCGCAACCAACACCGGAAACCTTTTGTTCAGCACTGGAGTCATCGATTTTGCTGGCTCCGGTGTTGTTCATATGGTTGGTGGTGTTGCTGGTCTCTGGGGAGCACTGATTGAAGGTCCGCGAATCGGACGGTTCGATCATTCTGGTCGAGCCGTCGCTCTTCGCGGACATAGTGCTTCCCTTGTTGTTCTTGGCACCTTCATGCTTTGGTTTGGTTGGTATGGTTTCAACCCTGGTTCCTTCACTAAGATTCTCAGTCCTTATAACTCAGGTAATTACTATGGACAGTGGAGTGCGGTGGGTAGGACGGCGGTGACAACGACGTTAGCGGGATGCACGGCGGCGCTGACAACACTTTTCGGGAAAAGAATTCTCTCCGGTCACTGGAACGTTACCGACGTATGTAACGGTTTATTAGGCGGATTTGCCGCAATAACCGCCGGGTGCTCCGTCGTGGAACCATGGGCAGCAATAGTTTGTGGCTTTATAGCAGCGATAGTTTTGATCGCGTGCAACAAACTCGCGGAAAAGGTCCGTTACGATGATCCATTAGAAGCAGCGCAACTACACGGAGGATGTGGCGCGTGGGGTATAATATTCACAGCTTTGTTTGCAAAAGAAGAGTATGTGAACCAAGTTTATCCGGGTAAACCGGGTCGACCCTATGGGTTATTTATGGGTGGTGGAGGGAAGTTATTAGGGGCACATGTGATTCAAATATTGGTTATTATTGGTTGGGTTAGTGCAACAATGGGTCCTTTATTTTATATTTTGAATAAAATGAAGTTGTTAAGGATTTCAGCTGAAGATGAACTTGCGGGTATGGATATGACCCGACATGGTGGATTTGCTTATGCTTATGAAGATGATGAGTCACACAAAAATGGGATTCAATTGAGGAAAGTTGATCATAACTCTTCTTCTACTCCTACTCCAACCACAAATTCATGA 1512 0.4722 MSLPECSVEQLTQFIGPNATNAEAAAQFICSQFSAVGNKFIDTQFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGGPSNGFIGKHFFGLKDVPTEAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSGDGWASATNTGNLLFSTGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHSGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSPYNSGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFIAAIVLIACNKLAEKVRYDDPLEAAQLHGGCGAWGIIFTALFAKEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFYILNKMKLLRISAEDELAGMDMTRHGGFAYAYEDDESHKNGIQLRKVDHNSSSTPTPTTNS* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2617 503 SUPERFAMILY Ammonium transporter 47 453 - -
Tpr1g2617 503 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 5 494 - -
Tpr1g2617 503 MobiDBLite consensus disorder prediction 483 503 - -
Tpr1g2617 503 Gene3D Ammonium transporter AmtB like domains 29 491 IPR029020 -
Tpr1g2617 503 Pfam Ammonium Transporter Family 51 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tpr1g2617 503 PANTHER AMMONIUM TRANSPORTER 5 494 - -
Tpr1g2617 503 MobiDBLite consensus disorder prediction 488 503 - -
Tpr1g2617 503 TIGRFAM amt: ammonium transporter 48 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tpr1g2617 503 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2617 Tpr-Chr1 29870091 29872636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2617 5 499 Inorganic Solute Cotransporters AT4G13510 82.107 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2617 K03320 - egt:105950262 837.025