Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2616 ATGTATTATCGTGGAGTTATGGCTGGCCAATTTGGTCATGGTATCATGGAGGAAGATTTATGGAGGAAAGGACCTTGGACTGCTGAAGAGGATAGGTTGCTAATTGAGTATGTTAGGGTGCATGGTGAAGGGAGGTGGAATTCTGTTGCCAGACTTGCAGGATTGAGAAGGAATGGAAAGAGTTGCAGATTAAGATGGGTGAATTATCTAAGGCCAGATCTCAAAAGGGGTCAAATCACACCACAAGAAGAGAGCATAATTCTAGACCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAACTTACCGGGAAGAACGGACAATGAAATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGGCAAAAAATCCCTCTGATGCTGCCGAAAAGGCGAAAAATCGATTCCTGAGGAAGCAGCTATTTCATCAGCAACAACAACAGTTGCAGCAAGTTCAACAACAGCAGCAACAACAACTGCAATTCAACTTGGACATGAAAGATGTCGTGTCCTTGTTTGAGGAAAATAATATTAATAACCATAGAGTTCCTTATATATCTCAAACTAGACAAGAAATGTTCAACATGTGTCCAAACACAACAGAAGAACAGAGTTACTTTATGTTTAATGGAAACTCTTCTGTACAAGATTCTTCAGCAAATGATGTTTTGTGGGATGATGGACTGTGGAATTTGGATGATGTTCATGGGAATTTCAGTGTTGCTAATGCAACAAACAAAACTGGTTTATATAATTTAGTTACTCCTAATTATTGTTAG 789 0.3929 MYYRGVMAGQFGHGIMEEDLWRKGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLRRNGKSCRLRWVNYLRPDLKRGQITPQEESIILDLHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKKAKNPSDAAEKAKNRFLRKQLFHQQQQQLQQVQQQQQQQLQFNLDMKDVVSLFEENNINNHRVPYISQTRQEMFNMCPNTTEEQSYFMFNGNSSVQDSSANDVLWDDGLWNLDDVHGNFSVANATNKTGLYNLVTPNYC* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2616 262 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Tpr1g2616 262 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Tpr1g2616 262 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Tpr1g2616 262 PANTHER MYB TRANSCRIPTION FACTOR 3 253 - -
Tpr1g2616 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Tpr1g2616 262 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Tpr1g2616 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 253 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr1g2616 262 CDD SANT 80 121 IPR001005 -
Tpr1g2616 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Tpr1g2616 262 Gene3D - 23 75 - -
Tpr1g2616 262 SMART sant 22 72 IPR001005 -
Tpr1g2616 262 SMART sant 75 123 IPR001005 -
Tpr1g2616 262 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Tpr1g2616 262 Gene3D - 80 124 - -
Tpr1g2616 262 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2616 Tpr-Chr1 29852284 29854094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2616 16 262 MYB Transcription Factor Family AT4G13480 55.224 2.34e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g2616 Myb_DNA-binding 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2616 K09422 - gmx:100795981 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2616 1 29852284 29854094 Tpr1g2616 1 29852284 29854094 ECH