Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2605 ATGAAGAAGGCCAATGAACTTAGCACCCTTTGTGGAATACAAGCATGTGTCATAGTCTATGATCAAAACAATCCTCAAGCAGAGGTTTGGCCATCAGATTCAGGAGTCAAAAGTGTGTTATCGAGGTTTAGAAGCTTGTCTGAATTTGAACGAAGCAAAAAGATGGTGGATCAGGAGGTCTTCTTAAGGGAAAGCATAGAGAAACGTCATGGCCAATTGAAGAAACAAAGGGAGGAAACTAGAAAGAAGGAATTTACTGATATAATTAATAATTACATTCATAATGGAGAATTTAAAAGCAATTTAATGAGCAAAGATGATCTCGCTGTTTTCTCATCTTTTATCGATGAGAATTATCTGAAGGAAATCAATCAAAAGATGCAAGGAATGAAAATTGAAGCCCAAGATCCTTAG 414 0.3623 MKKANELSTLCGIQACVIVYDQNNPQAEVWPSDSGVKSVLSRFRSLSEFERSKKMVDQEVFLRESIEKRHGQLKKQREETRKKEFTDIINNYIHNGEFKSNLMSKDDLAVFSSFIDENYLKEINQKMQGMKIEAQDP* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2605 137 Coils Coil 63 83 - -
Tpr1g2605 137 CDD MADS_SRF_like 1 57 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr1g2605 137 Gene3D - 1 95 IPR036879 GO:0003677|GO:0046983
Tpr1g2605 137 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 24 IPR002100 GO:0003677|GO:0046983
Tpr1g2605 137 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 131 - -
Tpr1g2605 137 PANTHER MADS BOX PROTEIN 1 131 - -
Tpr1g2605 137 SUPERFAMILY SRF-like 1 66 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2605 Tpr-Chr1 29756599 29757012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2605 5 131 Type I MADS-box Gene Family AT5G48670 42.636 1.24e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g2605 SRF-TF 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2605 - - mtr:MTR_3g465410 172.17