Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2596 ATGTCTGAGAAAATTTTCATCGAAAATGATGACAAAAAAAACCTCAAGCGCAAAATGGAGGATTTAGAGCCAAAGCATGAGAAGTCAAAGGTAATTCCACAAACCTCTGAATCCGATGTTAAGGATTTACTTACTCTGAGGCTTGGCATTCACACCAAGTCCACTATCAAATCCTTAGAGATTGGTGAACATTCAAGTTCATATAAAAACGCTGCCGATGAACCTTTACCTGAGCAACAAGTGAGGGAATTCCTTTGTCATTATTGTGACAAGAAATTCTCCACTTCTCAATCACTTGGAGGACACCAAAACGCTCATAAGCGTGAGCGTGCCTCCAAAAAAATGGAAGAAGAAAGGAGAAAGGTGGAGGAAATGAATCAAACCCTAAGGTTTAGCTATAGTAATCAACTATACCCTTATCAATTTCCAAGCCCTATTCCCTATCAAGGGTATTCATATTTACATAGTGCTAACTTGAACTATCCAATTAGCTCCCATATTAACAATATCATGCCTTCTTGGGCCATTGGTTCTCCTTCTAATGGCTATGGAGGGTTGCAAATTCCAAATTCATCCCTCACAATACCACAATTTGGGATGACTGACTTTAGGGGTGGAGGTCAACATGTTGCATTGCAAATTCCGCAAAGGTCAAACACTATGGGTTTGAGACTTTTTGCTCAAGATAATCAAACCCCTTCAATTGCTGAGAGTACAGAAAGAAATTTCAATGCTCAGTTTCGTTCTCAAACTCTTCCATTGTTGTCTCATACCGATCCTATTGGAGGCGACCAAATTCAAATAAATCACAACATTTCTTCACCACCAACTCAATCAACCTCAGAGGCACTAAACTTGAATCTCACCCTATAA 873 0.394 MSEKIFIENDDKKNLKRKMEDLEPKHEKSKVIPQTSESDVKDLLTLRLGIHTKSTIKSLEIGEHSSSYKNAADEPLPEQQVREFLCHYCDKKFSTSQSLGGHQNAHKRERASKKMEEERRKVEEMNQTLRFSYSNQLYPYQFPSPIPYQGYSYLHSANLNYPISSHINNIMPSWAIGSPSNGYGGLQIPNSSLTIPQFGMTDFRGGGQHVALQIPQRSNTMGLRLFAQDNQTPSIAESTERNFNAQFRSQTLPLLSHTDPIGGDQIQINHNISSPPTQSTSEALNLNLTL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2596 290 SUPERFAMILY beta-beta-alpha zinc fingers 82 111 IPR036236 -
Tpr1g2596 290 Coils Coil 108 128 - -
Tpr1g2596 290 Gene3D Classic Zinc Finger 70 136 - -
Tpr1g2596 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Tpr1g2596 290 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 234 IPR044246 GO:0009788
Tpr1g2596 290 MobiDBLite consensus disorder prediction 103 118 - -
Tpr1g2596 290 MobiDBLite consensus disorder prediction 97 118 - -
Tpr1g2596 290 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2596 Tpr-Chr1 29667706 29668629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2596 82 114 C2H2 Transcription Factor Family AT5G14010 69.697 1.48e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2596 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2596 - - cam:101490368 217.624