Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2593 ATGACTAACACTGCTAAGGAGTTCCCTGACTTCTTCAAAGTCTTCCTCACAGAGAAGCACTCTGACAGAATGCTTATCCCAGTTGCTTTTGTGAAGCTAATGCATTCAAAAAGGAAAGTAATTAGGGATTTTATCCTCAGAGATCATAGAGGAAGAGATTGGAATGTAAAATCACGTCGTATTGGTATCAAGCATTATTTTGAGGATGGTTGGAAGCGATTCAGAGAAGAAAATTCTTTAGAGGAAAATGACTTCCTTTTTTTTACACATGTTGAAAATAATGTGTTCAAGTTCAAAATCCTTGAATTCTCATCAATGTGTGAAAAGATGAAGGAAATAGATGAGGAGGAAAACAATAATATGATGGAGAATCATGAAAATGACGATGGTGGTGATGCTGCTGCTGCTGCTGCTGATGATGATATAATGGTAGAGGAAGATGATGATGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGATGACGATGACGATTTTGCTGATGATGACGAGGAAGAGCATGATGAGTACATAATTAAAGAAGAAGAAGACGAAGAAGAGAACGAAGAAGTGTACGAGAAATTTAGTGAAAGTGAACCTCAACATAGTAGAACATGCAAACATTGGGACATTGGAAGCAGCACTGCAGATTCAAAACTTGAACATGATGAAATTAATGCTGAAATGTATGTCCAACCAGGAAATCCACACTTCATCGTGAAACTTCTTCGTTACAGACCCAATGAATTGCACATTCCAACGAATATTATTAAGGATTTCTGTCTTTGCTTCACAAAATATATCAACCTTGTATGTTGCGACTGCAAGGATCTTCAAAGCAATGACCTAGAAGACTATCATCATATGCTGCCACAGATGAACCCAAACCATATCGAAAAGAGAGGAAAAGTACGTACATGGACAAACGGCCGATGCGTGGTGAAAGGGTGGGTAGAATTTTGTAAAATGAGCAATATCAGTGAAAATGATACATGCTTGTGTGAAATTGTGTTGCGTGACCACAATGAAGCAATAGAAATGCTAAGGTTGCACGTCGTTAGGAAAGAATGA 1080 0.3778 MTNTAKEFPDFFKVFLTEKHSDRMLIPVAFVKLMHSKRKVIRDFILRDHRGRDWNVKSRRIGIKHYFEDGWKRFREENSLEENDFLFFTHVENNVFKFKILEFSSMCEKMKEIDEEENNNMMENHENDDGGDAAAAAADDDIMVEEDDDEEEEDDDDDDDDDDDDDDDFADDDEEEHDEYIIKEEEDEEENEEVYEKFSESEPQHSRTCKHWDIGSSTADSKLEHDEINAEMYVQPGNPHFIVKLLRYRPNELHIPTNIIKDFCLCFTKYINLVCCDCKDLQSNDLEDYHHMLPQMNPNHIEKRGKVRTWTNGRCVVKGWVEFCKMSNISENDTCLCEIVLRDHNEAIEMLRLHVVRKE* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2593 359 Gene3D - 184 358 IPR015300 -
Tpr1g2593 359 Gene3D - 2 107 IPR015300 -
Tpr1g2593 359 MobiDBLite consensus disorder prediction 145 213 - -
Tpr1g2593 359 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 2 354 - -
Tpr1g2593 359 MobiDBLite consensus disorder prediction 145 196 - -
Tpr1g2593 359 SUPERFAMILY DNA-binding pseudobarrel domain 234 340 IPR015300 -
Tpr1g2593 359 CDD B3_DNA 9 101 IPR003340 GO:0003677
Tpr1g2593 359 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Tpr1g2593 359 SMART B3_2 11 104 IPR003340 GO:0003677
Tpr1g2593 359 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Tpr1g2593 359 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Tpr1g2593 359 PANTHER B3 DOMAIN-CONTAINING 2 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2593 Tpr-Chr1 29625700 29628555 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2593 8 357 B3 DNA Binding Superfamily AT3G06160 22.563 1.35e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2593 B3 2.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2593 - - mtr:MTR_1g046320 248.054