Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2589 ATGACTAACACTACCAAGGAGTTCCCTGACTTTTTCATAGTCTTTCTTACTGAAAAGCACACTGAGAGAATGCTTATCCCAATTGCTTTTGCGAAGCTAGTGCGTTTAAAAAGAAGGGTAATGCCGTATTTTATCCTCAGAGATCGTAGAGGAAGAGATTGGCATGTCAAAGTACGTCCTATTGGCCGAAAACTTTATTTTGATGATGGTTGGAAGCGATTTGGAGAAGATAATTCTTTAGAGGAGAACGACTTCCTTGTTTTTACACATATTGAAAATAATGTATTCAAGTTCAAAATCTTTGAACTATCATCAATGTGTGAAAAGATAAAGGAAATGGATGTGGAGGAAGAGAATAATATGATGGAGGATCGGGAGGAGGTTGAGCTGGATGACGATGACACCAACGAAGATGATGATGATAATATGATGGCAAAGGAAGAAGAAGACGATGATGAAGAAGCGTACAAAGGATTTGGTAGAAGTGAACATCAACATTGTAGAACCTACAAAGACCGGAGCATTGGGAGCAGTTCTGCAGTTCCAAAACTCGAAGATGATGAAATTGACGCTAAAATGTATATTCGGGAGGGAAGTCCATTCTTCTTTGCAAAACATCAGCTTTACAGACCCAATCAATTGCATTTTCCAAAAAGTGTTATTAAGGATTTCTGCTTTTGCTTTTCAAAGCATATCAACCTTGTATGTTGCCACTGCAAGGATGTTCAAGCAAATGAAATAGCAGCCTATCATCATGTGTTGCCACAAATGAGCGCAACACATATCGAAAAGAGAGGAGAAATATGTAATTGGAGTGACGGTCGAGTATATGTTAAAGGATGGGCAGATTTTTGCACAATGAGCAATATCACAGAAAATGATCGATGCTTATGCGAAATTGTGTTGCGTGAAGACGGAACAATTGAAATGTTAATGGTACACATTGTTAATGTTGAGTAG 960 0.3823 MTNTTKEFPDFFIVFLTEKHTERMLIPIAFAKLVRLKRRVMPYFILRDRRGRDWHVKVRPIGRKLYFDDGWKRFGEDNSLEENDFLVFTHIENNVFKFKIFELSSMCEKIKEMDVEEENNMMEDREEVELDDDDTNEDDDDNMMAKEEEDDDEEAYKGFGRSEHQHCRTYKDRSIGSSSAVPKLEDDEIDAKMYIREGSPFFFAKHQLYRPNQLHFPKSVIKDFCFCFSKHINLVCCHCKDVQANEIAAYHHVLPQMSATHIEKRGEICNWSDGRVYVKGWADFCTMSNITENDRCLCEIVLREDGTIEMLMVHIVNVE* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2589 319 PANTHER B3 DOMAIN-CONTAINING 2 316 - -
Tpr1g2589 319 Pfam B3 DNA binding domain 13 102 IPR003340 GO:0003677
Tpr1g2589 319 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Tpr1g2589 319 MobiDBLite consensus disorder prediction 117 140 - -
Tpr1g2589 319 Gene3D - 185 319 IPR015300 -
Tpr1g2589 319 SMART B3_2 11 104 IPR003340 GO:0003677
Tpr1g2589 319 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 2 316 - -
Tpr1g2589 319 SUPERFAMILY DNA-binding pseudobarrel domain 9 103 IPR015300 -
Tpr1g2589 319 Gene3D - 2 107 IPR015300 -
Tpr1g2589 319 MobiDBLite consensus disorder prediction 119 140 - -
Tpr1g2589 319 CDD B3_DNA 11 101 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2589 Tpr-Chr1 29567956 29570530 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2589 8 315 B3 DNA Binding Superfamily AT3G06160 25.234 4.62e-19 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2589 B3 4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2589 - - mtr:MTR_1g046320 400.979