Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2576 ATGGAAGAATATTGTTGCAGGGCACGCCCTCATTTCTCTTTGTCACCGTCTTTTCCTTCGGTTGATTCTTCCACCTATGTTAACATACAACCTATTTCGTCCGATATATATTTCAACATCCTAGTTGAATACACACATATGTTTGTTCCAACCGATGGAACTCGATCTTTTGGAAGTACTTGTCGTCACGTTCTTCGTAATGTCTCAATGGAACAACTGATGCAAGAAACTACTTTTGTACCATGGTTTTCAAAAATAAATTTTCCAAACGATGCTTTTAGGTTGGTGTTTGAAGAAATATTGCAATGTGCTAATCATATGGTTTTTGAAGATGAAGAGGACCTAAATGTTTTTAGTATTCGAGTTGATTTAGATGTTACGACGCCTCTTGAAGATGACAGTTGTGATGAAGGTGATTATTATAAAGATGAAGAGAACAACGGTTTGGATGAGGATGAAGAGGAAATAGAGATTGAAGAACAACAAGAAGAAGATAGTGATTTGGTTCCCGCTATTACGAGGGGTACGAAGGGTGAAAGTTATGAAGATTATTATACAGATGAAGAGGAAATGGAAGTTGAAGAAGAAGAAGATAATAGGTTGGTTGCTGCTAGGTCTATTGAAGGTGAAAGCTATGAACTTGATTATGCAGACAATTACGGCTATGATGGCAATGTTGATTTGGAGGAGGATGAAGAGGAAATGGAGGTTGAAGAAGAAGAGGAGGATAATGAGGTTGTTACAAGGGCTAGTGAGGTTGAAGGTTATGAAGTTGATTATGAAGACAGTTACAGCTATGAAGGCTATGATGGTTTGGAAGAGGATGAAGAGGAAATGATCTTTGAAGAAGAACATATTAGGTTTAATCCTGCGGCTAAGTCTTGTATCGAGGAATTGGAGATGGTAGAAGTTGAAGAAGTGGCAAAATGTGTTATTTGTTTTGAAGATCTTAATGCCGGTGTCCGATTGCCGTGTTCACACATCTTTCATGCAAACTGTATCCAAGATTGGTTGGAGGTCGCCAACTCCTGCCCCTTGTGTAGGTTCCAATTTCGAATTGCAGACACTTGTGTAGATTATTTGTAA 1086 0.3849 MEEYCCRARPHFSLSPSFPSVDSSTYVNIQPISSDIYFNILVEYTHMFVPTDGTRSFGSTCRHVLRNVSMEQLMQETTFVPWFSKINFPNDAFRLVFEEILQCANHMVFEDEEDLNVFSIRVDLDVTTPLEDDSCDEGDYYKDEENNGLDEDEEEIEIEEQQEEDSDLVPAITRGTKGESYEDYYTDEEEMEVEEEEDNRLVAARSIEGESYELDYADNYGYDGNVDLEEDEEEMEVEEEEEDNEVVTRASEVEGYEVDYEDSYSYEGYDGLEEDEEEMIFEEEHIRFNPAAKSCIEELEMVEVEEVAKCVICFEDLNAGVRLPCSHIFHANCIQDWLEVANSCPLCRFQFRIADTCVDYL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2576 361 CDD RING-H2_PA-TM-RING 310 348 - -
Tpr1g2576 361 ProSiteProfiles Zinc finger RING-type profile. 310 348 IPR001841 -
Tpr1g2576 361 Coils Coil 142 162 - -
Tpr1g2576 361 Coils Coil 225 250 - -
Tpr1g2576 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 199 350 - -
Tpr1g2576 361 SUPERFAMILY RING/U-box 309 353 - -
Tpr1g2576 361 SMART ring_2 310 347 IPR001841 -
Tpr1g2576 361 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 199 350 - -
Tpr1g2576 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 352 IPR013083 -
Tpr1g2576 361 Pfam Ring finger domain 309 348 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2576 Tpr-Chr1 29440495 29443376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2576 278 355 C3H Transcription Factor Family AT3G02340 42.045 3.06e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2576 - - mtr:MTR_3g031000 188.348