Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2571 ATGGATGGCCTTTCTATCGTGGACGACCTTTTGGATTTCTCATCTGACATAGGTGAGGATGATGATGATGATAAATCTAAGAAATCTGTTCCTTCACTTAAACCGAAATGCAGTGATCCACCGTCACTTAGTCCATTGGGCCTGGATGATGCTAACCATTCATTTCCTGAGTATGCAGAAGAGGAGCTTGAATGGCTCTCAAACAAAGATGCATTTCCGGCTGTTGAAACATTTGTTGACATTTCCTGTATTCAACCGGATATGTCAAAGTATCAAAAGACAACACCAACGCTCGAGAACAGCACAAGCAGTAGCAACAACAGCAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCAAATGAAGTTCCCTGTTCGTGCAAGGAGCAAGTCTCGTAGCAAGCCTCGCCTTGACACCTTGAACCAGCAATTCCCGTGGAAACAACCAAGTACCAAAATTTCCAGAGAACAAGTGAGACCAACCTCAAACATTGAGAGGAAATGTCATCACTGTGGAGCTGATAATACTCCACAATGGCGTGCAGGTCCGAATGGTCCGAAAACCCTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCAGACTTGTCCCTGAATACCGCCCTGCAAATAGCCCAACTTTTCGCCGTGACGTTCATTCTAATTCCCACAGGAAAGTACTGGAGATGAGGAGGCAAAAGGGAATGGGTTGA 720 0.4486 MDGLSIVDDLLDFSSDIGEDDDDDKSKKSVPSLKPKCSDPPSLSPLGLDDANHSFPEYAEEELEWLSNKDAFPAVETFVDISCIQPDMSKYQKTTPTLENSTSSSNNSNNSSNSITLLSGYNQMKFPVRARSKSRSKPRLDTLNQQFPWKQPSTKISREQVRPTSNIERKCHHCGADNTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPANSPTFRRDVHSNSHRKVLEMRRQKGMG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2571 239 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355|GO:0043565
Tpr1g2571 239 MobiDBLite consensus disorder prediction 93 118 - -
Tpr1g2571 239 Pfam GATA zinc finger 171 204 IPR000679 GO:0006355|GO:0043565
Tpr1g2571 239 PANTHER GATA TRANSCRIPTION FACTOR 1 7 236 - -
Tpr1g2571 239 Gene3D - 166 236 IPR013088 GO:0006355|GO:0008270
Tpr1g2571 239 PANTHER GATA TRANSCRIPTION FACTOR 7 236 - -
Tpr1g2571 239 MobiDBLite consensus disorder prediction 13 54 - -
Tpr1g2571 239 CDD ZnF_GATA 170 219 IPR000679 GO:0006355|GO:0043565
Tpr1g2571 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 229 - -
Tpr1g2571 239 ProSiteProfiles GATA-type zinc finger domain profile. 165 201 IPR000679 GO:0006355|GO:0043565
Tpr1g2571 239 SMART GATA_3 165 215 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2571 Tpr-Chr1 29375059 29379002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2571 1 235 C2C2-Gata Transcription Factor Family AT3G24050 40.824 2.88e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr1g2571 GATA 1.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2571 - - mtr:MTR_5g007600 284.263