Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr1g2565 | ATGGAGGAGGATATGAAAATTGTTGATATTGTTGATGTTCCTGATACCCCAGATAGACCAAATGTTGGAAACCATGCTAAAAAAATTGTAGGTAATCCCGAGAAGAGGGGGAGGGATTTTCCTGTTGCTGGTGAAATAAGCAACTGCAGCAACTATATAATATTGTCTCCGGATAAATGTTACCCATCTCAGAATGCTCCCATATTTAGGAGAGCCCAAGCTGAGAAAGTTTATGGACTTGGGACATCACACTCTAATGGAGGTGAAAAGATGGAGAAAGGGAAAACTGTAAGCTCCAAGGTTCCTTCTAGGTCATCTCATCATGGGCATTTTCCTGTTTTTGATTTGACTGAAGAGAATGGGCAGTCCCAACAACCAAAACCAGCTTCCTCACATCGTGGATCGAGAGATAACACAATTGAAGACAAGAAAGAAGTGAAAGCAAGTATTGGGAATTCTTCGTTACCCTTAATCACTGGTTCTTCGAATACATCCAGAAATGCAGTCACTGGAAAGTATAAATCAGATAACAAAATACTAATTCCTAATATATTTATGGACCGTGGCAAGAGCATTGCTCTGTCAAATGATTCGCAATCTCAACCGAAAGTTGAAAATCAACTTCCTTTGCCTCCTCGTCCTTCCACTGCAACTAGAGGTAGAGGGCACAAGAGATTGGTACGGAATGGGTGCATTTCGCCACATAATATTGCAACAAGGGCAAAACAATCAGCTGAACAGAGCAGCCCTCAAACCAATGATGTAGAACAGACCTGTGCTGGGCATTCAGTTTCTAGCAATACAATGTCTCCAATTAGTGTTGATGATATTGTTGCTGAAGAGAGAGGTGGTGGTAGAGTGAAAGGAAAGGGAGTGCTTATTCATCCTTCACATGGAGCTAGTGCTAGAACTATTCACACTGATAGCAGCAGCCCTGTGGTCAATTATGAAGAGGCCAGTGGCAGTAGTAATAAACCAATAAATTCAGTCGGAAACTGGGAGAGACAAAGTGGTTGGAGAACTACACATAATGATGTGAATGGGCATCATTCAAGGAGAAGTTTTAATGAAAAATTTATTCACAGACAGAATATGAACAGTATAGAAAGAAGGGACACTGGGAGCAGTCAAAATGGCAAGGATGTAGGTCAGTCAGCTGGACCTAGTACTATTGCTGACTCACTGACTAAAAGGCAAAGGAAACGGGAATCATCTTCTAGAAATCCTAATGTAGCATCTCATAATTCTGAAACTATATTCGTCAATTCATCTGGGGAATCATCAAGTTCATCCCGAAGCCATGTCATGGATCCTGATTTAAATGACAATGACAACAATAGTTCGGTTGCTCGGGCAATGCAATTAGAAGCAGATGAGATGTTGGCACGTGAACTCCAAGAACAGATGTATAATGATGATTATTTTGATGACAGTTGGATTGATGAACATATAGCACGGGAGCTGCAGGATGAAGCGGATCTTCTGCACACGTCTACTGTTAATAATCAGATACCTCATCCTTCAAGGGCTCCGAGGGAAAATAGACAGCCCCATTCACGACCACATCAAAATCCTTCAAATAGGAGGAGAACTATGCCTCAAGTTACTCTCTCTAATAGAACCTCACAGTTGAGGAGTCGCATGACAACTCGATCGTCAAGGCCTACCATGCCATCTAGAGGAAGAGGAAGAGGACGAGGACGAGGAAGACTCCCCCGGTTTCCTCTAGATATGGACCTAGACATGAGACTTGATATATTGGAAGCATTAGAAGATGCAGTAGGGGATTTTAATGATATGGGAATGGGAGATGACATCCTTAATGCTCATCGTGATTTCAATGAAGATGATTATGAAATGTTATTGGCCCTTGATGACCACAATCACCAGCATACTGGTGCATCTACCAATCTGATCAATAGCTTGCCACAGTCTACTGTCCAGACTGACAACTTCACAGAGGATTGTGCCGTATGTCTTGAGACCCCTGTCAGGGGAGACATTATTCGCCACCTTCCTTGTTTGCATAAATTTCACAAAGACTGTATTGATCCTTGGCTTGGTAGGAAAAGGTCGTGCCCGGTGTGCAAGTCATCTCTCACCTAA | 2106 | 0.424 | MEEDMKIVDIVDVPDTPDRPNVGNHAKKIVGNPEKRGRDFPVAGEISNCSNYIILSPDKCYPSQNAPIFRRAQAEKVYGLGTSHSNGGEKMEKGKTVSSKVPSRSSHHGHFPVFDLTEENGQSQQPKPASSHRGSRDNTIEDKKEVKASIGNSSLPLITGSSNTSRNAVTGKYKSDNKILIPNIFMDRGKSIALSNDSQSQPKVENQLPLPPRPSTATRGRGHKRLVRNGCISPHNIATRAKQSAEQSSPQTNDVEQTCAGHSVSSNTMSPISVDDIVAEERGGGRVKGKGVLIHPSHGASARTIHTDSSSPVVNYEEASGSSNKPINSVGNWERQSGWRTTHNDVNGHHSRRSFNEKFIHRQNMNSIERRDTGSSQNGKDVGQSAGPSTIADSLTKRQRKRESSSRNPNVASHNSETIFVNSSGESSSSSRSHVMDPDLNDNDNNSSVARAMQLEADEMLARELQEQMYNDDYFDDSWIDEHIARELQDEADLLHTSTVNNQIPHPSRAPRENRQPHSRPHQNPSNRRRTMPQVTLSNRTSQLRSRMTTRSSRPTMPSRGRGRGRGRGRLPRFPLDMDLDMRLDILEALEDAVGDFNDMGMGDDILNAHRDFNEDDYEMLLALDDHNHQHTGASTNLINSLPQSTVQTDNFTEDCAVCLETPVRGDIIRHLPCLHKFHKDCIDPWLGRKRSCPVCKSSLT* | 702 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 196 | 273 | - | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 369 | 394 | - | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 297 | 441 | - | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 526 | 557 | - | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 236 | 273 | - | - | |
| Tpr1g2565 | 701 | SMART | ring_2 | 656 | 696 | IPR001841 | - | |
| Tpr1g2565 | 701 | ProSiteProfiles | Zinc finger RING-type profile. | 656 | 697 | IPR001841 | - | |
| Tpr1g2565 | 701 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 513 | 699 | - | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 500 | 572 | - | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 345 | 368 | - | - | |
| Tpr1g2565 | 701 | SUPERFAMILY | RING/U-box | 655 | 700 | - | - | |
| Tpr1g2565 | 701 | Pfam | Ring finger domain | 655 | 697 | IPR001841 | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 408 | 441 | - | - | |
| Tpr1g2565 | 701 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 622 | 701 | IPR013083 | - | |
| Tpr1g2565 | 701 | PANTHER | - | 513 | 699 | - | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 81 | 141 | - | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 302 | 344 | - | - | |
| Tpr1g2565 | 701 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 656 | 697 | - | - | |
| Tpr1g2565 | 701 | MobiDBLite | consensus disorder prediction | 117 | 133 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr1g2565 | Tpr-Chr1 | 29293715 | 29300700 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr1g2565 | 8 | 701 | C3H Transcription Factor Family | AT1G04790 | 33.514 | 1.86e-80 | 267 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr1g2565 | - | - | cam:101513161 | 808.135 |