LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g2552	ATGGTGGTTTCTACTAAATTCATTCTCAATGTTTGTTTCATGCTGTTGCTTTTTGTGTTGCTTGTTCAAGAACATACCATGGCTTCACCACAGATCTCTCAGCTTAGCAATGTTGAAATTGAGACACACAGGTTACCAAGCTTTAACGATTCATCAATGGCGGCAAGGGAAAAAGAGGCTGAGAAATTGAATGAGCGTGCTGCCGTGGCTAATCCGCAAGAGGTGGTTTCTATGGTTGAGACGCACATTCAGAACAGCACTGAAAGAAGGAATCTCGGATTTTTCTCCTGTGGAACCGGTAACCCTATTGACGATTGCTGGCGTTGCGACGCCAATTGGCAACGCAACAGGAAGCGTCTAGCAGACTGTGGTATTGGTTTCGGTAGAAACGCCATTGGTGGTCGTGATGGAAAGTACTATGTTGTCACTGACTCAAGAGACGATGACCCTGTTAACCCAAGACCAGGAACTTTGCGTCACGCTGTCATCCAAGATAGGCCACTTTGGATTGTGTTCAAGAGAGACATGGTTATTCAGTTGAAACAAGAGCTTATTGTGAACAGTTTCAAGACAATTGATGGAAGAGGAACCAATGTTCATATTGCTAATGGAGGATGCATTACAATTCAGTATGTTACTAATGTTATCGTTCACGGTCTTCATATTCATGATTGTGTACCAACTGGTAATGCTATGGTGAGAAGCTCAGAAACACATTTTGGTTGGAGGACTATGGCTGATGGTGATGCTATTTCTATCTTCGGTTCAAGTCATATTTGGGTTGATCATAATTCTTTATCTCATTGTGCTGATGGTCTTGTTGATGCTGTCATGGGATCAACCGCTATAACAATTTCTAACAACCATTTCACTCACCACAATGAGGTGATACTGTTGGGCCACAGTGACTCCTACACAAGAGACAAGCAAATGCAAGTGACAATAGCTTATAACCATTTTGGAGAAGGACTTATTCAGAGAATGCCACGTTGTAGACATGGATATTTCCATGTGGTGAACAATGACTATACTCATTGGGAGATGTATGCTATTGGTGGAAGTGCTGACCCTACAATCAACAGCCAGGGTAACAGATACAATGCTCCTACTAACCCTTTTGCCAAAGAGGTAACTAAGAGAGTTGAAACACCAGAAGGCCAATGGAAAGGATGGAATTGGAGGTCAGAAGGAGATTTATATCTCAATGGTGCATACTTCACAGCATCAGGTGCTGGAGCTTCAGCTAGCTATGCAAGAGCCTCAAGTTTAGGAGCAAAATCTTCCGCTATGGTTGGAACCATTACATCAAATGCTGGCGCACTCGGTTGCAAAAGAGGTCGTCAGTGCTAA	1350	0.4304	MVVSTKFILNVCFMLLLFVLLVQEHTMASPQISQLSNVEIETHRLPSFNDSSMAAREKEAEKLNERAAVANPQEVVSMVETHIQNSTERRNLGFFSCGTGNPIDDCWRCDANWQRNRKRLADCGIGFGRNAIGGRDGKYYVVTDSRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGTNVHIANGGCITIQYVTNVIVHGLHIHDCVPTGNAMVRSSETHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYNAPTNPFAKEVTKRVETPEGQWKGWNWRSEGDLYLNGAYFTASGAGASASYARASSLGAKSSAMVGTITSNAGALGCKRGRQC*	450

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g2552	449	SUPERFAMILY	Pectin lyase-like	75	443	IPR011050	-
	Tpr1g2552	449	SMART	amb_all	175	372	IPR002022	-
	Tpr1g2552	449	PANTHER	PECTATE LYASE 18-RELATED	14	446	IPR045032	GO:0030570
	Tpr1g2552	449	Pfam	Pectate lyase	181	364	IPR002022	-
	Tpr1g2552	449	PRINTS	Pollen allergen Amb family signature	123	140	IPR018082	-
	Tpr1g2552	449	PRINTS	Pollen allergen Amb family signature	147	172	IPR018082	-
	Tpr1g2552	449	PRINTS	Pollen allergen Amb family signature	183	199	IPR018082	-
	Tpr1g2552	449	PRINTS	Pollen allergen Amb family signature	247	268	IPR018082	-
	Tpr1g2552	449	PRINTS	Pollen allergen Amb family signature	327	346	IPR018082	-
	Tpr1g2552	449	PRINTS	Pollen allergen Amb family signature	349	368	IPR018082	-
	Tpr1g2552	449	PRINTS	Pollen allergen Amb family signature	391	415	IPR018082	-
	Tpr1g2552	449	PRINTS	Pollen allergen Amb family signature	420	443	IPR018082	-
	Tpr1g2552	449	PANTHER	PECTATE LYASE	14	446	-	-
	Tpr1g2552	449	Gene3D	-	100	442	IPR012334	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g2552	Tpr-Chr1	29087234	29092841	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g2552	39	449	Polysaccharide Lyase	AT4G13710	77.644	0.0	698

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g2552	K01728		-	gmx:100808253	808.52