Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2549 ATGGCAACCCAATTTGACATGTTGTGCGATGTTCTTCCTGGGCATAATTCATGGAAGTTCAAAGTTTGTGTCCTCCGTATGTGGGCAATTTCTTCTTTTATGAAGCCTAATGAGTTGAACTCTATGGAAATGGTGCTGATAGATGAGAAGGGAGGTAAGATTCATGCCTTGATAAGGAAAGAATTGGTTTACCTATTCCAGAATAAATTAAAGGAAGGGGAAGTTTATAAGCTATCAAACTTTGATGTTGTTCCAGTCGTTGGATTTTATCGTACAACTCTGCATCCTTACAAATTGATTTTTCGATCGAATACCAAAGTTCAGAATTTTGCGAGTTCTGATATTCCTATTTTGGGATTTTCTTTCACCGATCTTGCTGAAGTGGCTAGCTACTCTGTTAACTATGATTACCTAATAGATGTCATTGGTTTAATCTCTGGTATATCAAATGAGAGGGAGTATATTCGTGCTGGCAAAGTCATCAAGATGGTTGTGCTTGAACTCACACAATCCACAATCCCGGTCCACGCGCAACATATTCTACCTGCCATACTGTTTGCAGGTTTGATTGTTGTTTCCATATTTTCTGTGTACACAGTAATTTCATTAATTACCGATATTCATCATAGTTTTTTTTTTTTGACCAATACAGTTCATCACTATAGGTAA 669 0.3707 MATQFDMLCDVLPGHNSWKFKVCVLRMWAISSFMKPNELNSMEMVLIDEKGGKIHALIRKELVYLFQNKLKEGEVYKLSNFDVVPVVGFYRTTLHPYKLIFRSNTKVQNFASSDIPILGFSFTDLAEVASYSVNYDYLIDVIGLISGISNEREYIRAGKVIKMVVLELTQSTIPVHAQHILPAILFAGLIVVSIFSVYTVISLITDIHHSFFFLTNTVHHYR* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2549 222 CDD RPA1_DBD_A_like 21 107 - -
Tpr1g2549 222 Pfam Domain of unknown function DUF223 43 136 IPR003871 -
Tpr1g2549 222 PANTHER REPLICATION FACTOR A 1, RFA1 7 168 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g2549 222 SUPERFAMILY Nucleic acid-binding proteins 5 108 IPR012340 -
Tpr1g2549 222 PANTHER BNAC01G35430D PROTEIN 7 168 - -
Tpr1g2549 222 Gene3D - 113 176 IPR012340 -
Tpr1g2549 222 Gene3D - 5 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2549 Tpr-Chr1 29052745 29054391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2549 13 149 Core DNA Replication Machinery Family AT5G08020 25.714 3.71e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2549 - - mtr:MTR_8g062030 197.208