Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2541 ATGGGAAAGCGAATTAGAGATAATAAAGAGGTTGGAATGTCTAATGGAATCAATTGCCATCATACTCATCCAGGAAGAGTATGGGGAATTCTTCATATTATAAAGTATCATCATTGGCGTCATGTCAAGAGAAGGATTACACCTAGAAGGTGTAGTGGTGGAAGTCATGATGCAAGGGATGAATTTCCAGGTACTTCTAATGATTCTGAGGTTGATAATGTGGCAGATCCAAATACAGCTTTATCCAATGTTGAAGAAAATAAGCTGGTACACTCCACTCCACATACCAAACAATCTATAAAATCAAGACTAAAATCACTTCTACATGAAGATATATACAAAAAGAAAGGTAGACATAAGAGAAGTTCAACCTGTCCTGCAAAGCCGTCGCAGTCGCAGCTAACTCGCGTTGATTCCGTTCATCACCTAGAGGTTGATCCACTAAGTGAAATGTTGTTAACTGTTGAAAATCCAGAACCAGTTATAGAAACTTTTCAAAACCATCTTGCTTCAGGAACATTAGAAGTTTTGTCACCAGTTTTCTCAGGTAGCAATAAATCAATCAATAGCAATAACACTAACAATGATAAATGTGTGGAATGTGGTGCAATGTTTTCTAGTGAGCCTTTGGAAAATCATGATGATAAGATTCATCATAAGCATCATAATATATCGATAGGTGATGGTTTGCCGGAAGATAAATTGATGAATGCGAAAATATTTACAACCGATGCTTCACCACATCTTTTCAAGGATTTTCTTGATGCTTTAGAAGTAATCAATACAAACAAAGACTTTCTAATGAAATATATCAATGATCCTGGATCTCCTTTGCCGTTCGAAATTCATACTCAACAACAGTCTCCTAATTTTCAACCAAGACGCGCCAATTCAATTTCGTTACCTGTTTATGGATCATCCTCAGGAACCAAAGATTCTGAGCACATGGTAGATAAATTGGGGAAGATACAATCACAAATTCAAAATTTAGGAGATTTAAACAAACCATCAACTTCTTCTTCACATAAAGTTGATGAGGTACACAATTCAGATCAAGAATCGGTTGAACGAGATTGTAAAAAAAATTCAACAGATTTGTCACAGGTTCAAAATCAAGTGAAGCCTAGGAACTTCATGGATCTTAGAAAGAAGATAAAGCATATAATTGAAGAAAGCAAAAATGAAAAGCGTCGCATTACGATGGATGCTATAGTAGATAAAATTCCTGGCGGAAATAGGTTTTCGGAAAATGTAAGGAATGGTTATTATGGTAATCGTCTTTCTAAGTCTTGCTCGAAAAATAAGAGTCAGTTATCGAGTATGAGGACTTCATCTCTAAAAGAATCGGTTGATCGATATTCTCAGCTTTATGACACTTGTTTTCAACATGAAGCAGCAGCTAGCAATAATGAAGTTAAGTATCCTAAAACTGAGAGCTTAAAATTGAAAACAGAAGAGAAAAGTTCGATATTAAAGACACCGAAATCCTTTCAAAGGTTTCTCTCATTACCTAATCTAAAATCTCAACTCAATCAAAGTGGCGAATCTTCTTTGCAATCATCTCCTAAGAATTTAATTAGAAAATCTGAAGACAGAACAATAAGCAGTGAAGAACCTTCTATGCAATCATCTCCTCAGAATTCAATGAGAAAAACTGAAGACAGAACCATAAACACAAATGATGATTTTTCGAAGAGTCAAATTCTGTCACCTACACTTTCTGATCATACAAATGAAGAAAGCACTGTGAATGATGAACAAAAACAAGATCATGTTAAGAGTGGTTCAGAATCAGAATCAGAATCAGAATCAGAAGCCGGATCAAATGTTAATGATGAGATAAAGTCAGATAAGAGTATAGTATTTGATGGTTTAGGAACCTTGAGAGGAAGTGAAAGTGCTGCTAGCATTGGATCTAATGCTATGTTGGTTGAAGCAAACTCAACTTTTTCTTCTGAAGCCAGCTTCTTAGATTGTACATTTGAGTTGGAAAACTTAAATGGATTGGAAGATCAAGAATTAAAGCCAGTGCCAGCTGATGTTGAATTGAATAACATATTTGAGCAACAAGAGGCTAAAGATGAAAATTTTCTGAAATTTGGATATGAAATTCCAAGCATGGAAATTGATACAAATAATGAAGCTGCATATAATTATGTAAAAAAAGTTTTAGAACTCTCAGGCTTCACCAGCAATGAATCTCTTGGAACATGGTATTCAGATAATCAACCACTTGATCCATCAGTTTATGAAGAATTAGAAGGATGTTTACTTCTTGATCCTGATTGTTCTGGTAATTGTGATGAAGGTGGACAATGCAATCATCTTCTTCTATTTGATATAATCAATGAAGGATTATTAGAGATTTTTGGAAGATCATATAATTATTACCCTAGGCCTTTATCTTCACTATCTTATGTTCATCCATTGCCAAATGGAGGAGATAATGTTTTGCATAAAGTATGGAAACTTATTAGTTGGTATCTTAATTCAGCTCCTAAAGAGGCTTATGCTTATACATCATTGGATTACTATGTTGGTAAAGATTTAGCAAAAAATGATGGATGGATGAATCTTCAATTTGATTCTGAATGTGTTGGGCTTGAGATTGATGATTTGATTTTTGATGATCTCTTGGAGGAAATTATCTACACTTAA 2658 0.3454 MGKRIRDNKEVGMSNGINCHHTHPGRVWGILHIIKYHHWRHVKRRITPRRCSGGSHDARDEFPGTSNDSEVDNVADPNTALSNVEENKLVHSTPHTKQSIKSRLKSLLHEDIYKKKGRHKRSSTCPAKPSQSQLTRVDSVHHLEVDPLSEMLLTVENPEPVIETFQNHLASGTLEVLSPVFSGSNKSINSNNTNNDKCVECGAMFSSEPLENHDDKIHHKHHNISIGDGLPEDKLMNAKIFTTDASPHLFKDFLDALEVINTNKDFLMKYINDPGSPLPFEIHTQQQSPNFQPRRANSISLPVYGSSSGTKDSEHMVDKLGKIQSQIQNLGDLNKPSTSSSHKVDEVHNSDQESVERDCKKNSTDLSQVQNQVKPRNFMDLRKKIKHIIEESKNEKRRITMDAIVDKIPGGNRFSENVRNGYYGNRLSKSCSKNKSQLSSMRTSSLKESVDRYSQLYDTCFQHEAAASNNEVKYPKTESLKLKTEEKSSILKTPKSFQRFLSLPNLKSQLNQSGESSLQSSPKNLIRKSEDRTISSEEPSMQSSPQNSMRKTEDRTINTNDDFSKSQILSPTLSDHTNEESTVNDEQKQDHVKSGSESESESESEAGSNVNDEIKSDKSIVFDGLGTLRGSESAASIGSNAMLVEANSTFSSEASFLDCTFELENLNGLEDQELKPVPADVELNNIFEQQEAKDENFLKFGYEIPSMEIDTNNEAAYNYVKKVLELSGFTSNESLGTWYSDNQPLDPSVYEELEGCLLLDPDCSGNCDEGGQCNHLLLFDIINEGLLEIFGRSYNYYPRPLSSLSYVHPLPNGGDNVLHKVWKLISWYLNSAPKEAYAYTSLDYYVGKDLAKNDGWMNLQFDSECVGLEIDDLIFDDLLEEIIYT* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2541 885 MobiDBLite consensus disorder prediction 536 553 - -
Tpr1g2541 885 MobiDBLite consensus disorder prediction 579 600 - -
Tpr1g2541 885 Pfam Protein of unknown function (DUF3741) 234 276 IPR022212 -
Tpr1g2541 885 MobiDBLite consensus disorder prediction 561 578 - -
Tpr1g2541 885 PANTHER PROTEIN TRM32 1 885 IPR044257 -
Tpr1g2541 885 Pfam Domain of unknown function (DUF4378) 717 881 IPR025486 -
Tpr1g2541 885 MobiDBLite consensus disorder prediction 50 66 - -
Tpr1g2541 885 PANTHER TRM32-LIKE PROTEIN (DUF3741) 1 885 - -
Tpr1g2541 885 MobiDBLite consensus disorder prediction 509 612 - -
Tpr1g2541 885 MobiDBLite consensus disorder prediction 331 362 - -
Tpr1g2541 885 MobiDBLite consensus disorder prediction 116 136 - -
Tpr1g2541 885 MobiDBLite consensus disorder prediction 509 524 - -
Tpr1g2541 885 MobiDBLite consensus disorder prediction 339 362 - -
Tpr1g2541 885 MobiDBLite consensus disorder prediction 50 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2541 Tpr-Chr1 28898522 28903263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2541 707 875 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 53.757 1.81e-55 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2541 - - gmx:100807303 912.909