Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2540 ATGTCTAGGAACATCAAGGAAGGGAGTGTCTTTGCAAAAAGGCATTATGTTATTTTATTGCTATTGACTTTACTTCTTTGTAGCACAGAAGGTTTGAATTTAGAGGGACAAATCCTTTTGGAGATTAAAAATGGAATTCATGATAAAAATAATGGTTTGGTAAATTGGAATTCTAGTGATGAAACTCCATGTCGATGGATAGGTGTAAATTGTAGTTATGATTATAACATTGGTAGTGATCCGGTGGTTATTTCGCTTAATTTGAGTTCTATGAATCTTTCTGGAACTTTAAATGCTAGCATTGGAGGACTTACCAATTTAACTTATCTCAATCTTGCTTACAATAGTCTTATTGGAAATATCCCTAAGGAGATTGGTGAGTGTTTGAGTTTAGAATATCTTTACTTGAACAATAATCAATTCGAGGGACCTATTCCTGTTGAATTAGGGAAACTCTCCCTTTTGAGAAATTTGAATATTTGCAACAATAAACTCTCCGGTGTTATTCCGGACGAGTTTGGAAAGTTGAGTTCATTGGTTGAGTTAATTGCTTATAGCAATTTTCTTGTCGGCCCTTTGCCGAATTCGGTTGGAAATCTTAAGAATCTTGCAACTTTCAGAGCTGGGGCGAATAACATTACTGGTAGCTTGCCGAAGGAAATTGGCAGATGTAAGAGTTTGGTACGTCTTGGTCTTGCTCAAAATCAGATCGAAGGGGAGATACCAAGTGAGATTGGGATGCTCGAAAGATTAAAAGAATTGGTTTTATGGGAAAACCAGTTATCAGGGGTTGTTCCTAAAGAGCTTGGGAATTGTAGCAGGCTTGAGATCCTTGCTCTATACGGGAATAATCTCATTGGACCATTACCTCGTGAGATTGGGAACCTGAAATCGTTGAAGTGGTTGTATCTTTACAGGAATAAGTTGAATGGATCCATTCCAAGGGAAATTGGAAATCTTTCTAAAGCCTTGCACATTGATTTCTCGGAGAACTCTTTAGTCGGAAATATCCCTTCAGAGTTCAGCAAAATTCGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCATTTAACCGGTGTTATACCAAATGAGTTCGGTAACTTGAAGAACCTGACGAAGCTGGACCTATCGATAAATAACATTACGGGTCCGATTCCACATAGCTTCCAATATTTGACTCATATGTCGCAGTTGCAACTTTTTGACAACTCCTTAAGCGGTATTATTCCTCAGGGACTTGGACTTCATAGTCGTCTTTGGGTGGTTGATTTTTCTGACAACAACTTGACAGGAAGTATACCTCCACATCTATGCCGAAACTCTCATTTGATGATGTTGAATGTAGCAAATAATCGGCTTTACGGACACATACCGACAGGGATATTAAACTGTGAATCGTTGGCACAGTTGCTGTTGATCGGTAACAGGCTTACCGGTGGTTTCCCTTCGGAACTGTGTAAACTGGTGAATCTAACAGCCATTGATTTGAATGATAACAGGTTCAGCGGTCCACTTTCTCATGAGATCGCAAACTGCCACAACTTGCAAAGGCTTCACATTGCAAACAATTACTTCACATTGGGGTTGCCGAAAGAAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCATCAAATCTTTTCACCGGAAGAATCCCACCAGAAATTTTTTGGTGCCAAAGGCTGCAGCGGCTCGATCTCAGTCAGAATCATTTTACTGGTTCTTTGCCAAATGAACTTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCCGACAATAAATTGTCTGGAAATATTCCTCCAGCATTAGGCAATCTGTCTCATTTGAACTGGTTGCGGATGGATGGCAATTTGTTTTTCGGTGAAATACCTCCCGAGTTAGGTTCTCTTTCGAGCTTACAGATTGAAATGGATCTCAGTTACAATAATCTTTCTGGAAGAATACCATCTCGGCTTGGCAATCTCAATATGCTTGAAAATCTGTTTCTCAATAACAACCATTTGGAAGGTGAAATTCCAAGTACCTTTAGCGCGCTTTCAAGCTTGATGGGGTGTAATTTCTCATACAATAACCTCTCCGGACCTATCCCTTCCACTAAAATTTTCGAAAGTATGGCTGTAAGCAGCTTTGTTGGTGGTAACATAGGCCTTTGTGGTACACCTCTCATTGACTGCAATAGCATTTCAGCTTCTCGCTCGATTCCTCATGTGAAAGACGTTGATTCTCCTCGTGCTAAAATTGTCATGATCATTGCAGCTACTGTCGGCGGTGTTTCTCTCATTTTGATTTTAGTTATTTTATATCTTATGAGACAACCTCGAGAGGCTGTTGATTCATTTGCAGACACAGAAACTCAATCTCCGGATTCAGATATCTATTTTCCTCCAAAGGATGGTTTCACGTTCCAAGACTTACTTGAAGCTACAAAAAGATTTCATGAAAGTTATGTCATTGGTAGCGGAGCATGTGGAACAGTTTATAAGGCAGTTATGAAATCTGGTAAGACCATTGCTGTTAAGAAGTTAGCATCGAACCGGGAGGGGAACAACGTCGATAATAGTTTCAGGGCTGAAATATCGACTCTAGGAAGGATTAGGCATCGGAATATAGTGAAGCTGTATGGTTTTTGCTATCACCAAGGTTCAAATCTCTTACTTTATGAATACATGGAAAGAGGTAGCTTAGGTGAATTATTGCATGGTTCTGCAAGTAATCTGGAGTGGCCGACTCGATTCATGATTGCTCTTGGAGCTGCCGAAGGTCTTGCTTACTTGCATCATGACTGTAAGCCGAAGATTATTCACCGTGACATAAAATCTAACAACATTCTGCTTGATGAAAATTTTGAGTCCCATGTTGGTGATTTCGGCTTGGCAAAAGTGATTGACATGCCTCAGTCAAAATCGATGTCCGCAGTTGCCGGATCTTATGGTTATATTGCTCCTGAATATGCATATACCATGAAGGTTACAGAGAAGTGCGACATATATAGTTACGGTGTTGTGCTCTTGGAATTGCTAACTGGAAAAACACCGGTTCAACCAATGGAGCAAGGAGGTGATCTTGTCACATGGACAAGAAACCGTATTCGGAACAATAACAATACATTGAGCTCAGAGATGCTCGACAATCGTCTAGATCTCGAAGACCAAATAACTATAAATCACATGCTCACTGTTTTGAAACTTGCTTTAATGTGCACAAGTATGTCTCCTACTAAAAGACCATCAATGCGCGAAGTTGTGTTGATGCTCATCGAGTCAAATGAGCGAGAAGGAAATTTAACACTCACTCGAACAAACCACAACCCTCCTTCCAAAGATAGCACATGA 3339 0.4001 MSRNIKEGSVFAKRHYVILLLLTLLLCSTEGLNLEGQILLEIKNGIHDKNNGLVNWNSSDETPCRWIGVNCSYDYNIGSDPVVISLNLSSMNLSGTLNASIGGLTNLTYLNLAYNSLIGNIPKEIGECLSLEYLYLNNNQFEGPIPVELGKLSLLRNLNICNNKLSGVIPDEFGKLSSLVELIAYSNFLVGPLPNSVGNLKNLATFRAGANNITGSLPKEIGRCKSLVRLGLAQNQIEGEIPSEIGMLERLKELVLWENQLSGVVPKELGNCSRLEILALYGNNLIGPLPREIGNLKSLKWLYLYRNKLNGSIPREIGNLSKALHIDFSENSLVGNIPSEFSKIRGLSLLFLFENHLTGVIPNEFGNLKNLTKLDLSINNITGPIPHSFQYLTHMSQLQLFDNSLSGIIPQGLGLHSRLWVVDFSDNNLTGSIPPHLCRNSHLMMLNVANNRLYGHIPTGILNCESLAQLLLIGNRLTGGFPSELCKLVNLTAIDLNDNRFSGPLSHEIANCHNLQRLHIANNYFTLGLPKEIGNLSQLVTFNVSSNLFTGRIPPEIFWCQRLQRLDLSQNHFTGSLPNELGTLQHLEILKLSDNKLSGNIPPALGNLSHLNWLRMDGNLFFGEIPPELGSLSSLQIEMDLSYNNLSGRIPSRLGNLNMLENLFLNNNHLEGEIPSTFSALSSLMGCNFSYNNLSGPIPSTKIFESMAVSSFVGGNIGLCGTPLIDCNSISASRSIPHVKDVDSPRAKIVMIIAATVGGVSLILILVILYLMRQPREAVDSFADTETQSPDSDIYFPPKDGFTFQDLLEATKRFHESYVIGSGACGTVYKAVMKSGKTIAVKKLASNREGNNVDNSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFESHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKTPVQPMEQGGDLVTWTRNRIRNNNNTLSSEMLDNRLDLEDQITINHMLTVLKLALMCTSMSPTKRPSMREVVLMLIESNEREGNLTLTRTNHNPPSKDST* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2540 1112 Gene3D Ribonuclease Inhibitor 508 600 IPR032675 -
Tpr1g2540 1112 SUPERFAMILY RNI-like 385 696 - -
Tpr1g2540 1112 SMART serkin_6 814 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2540 1112 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Tpr1g2540 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 4 1098 - -
Tpr1g2540 1112 Gene3D Ribonuclease Inhibitor 348 507 IPR032675 -
Tpr1g2540 1112 Gene3D Ribonuclease Inhibitor 205 347 IPR032675 -
Tpr1g2540 1112 SUPERFAMILY L domain-like 36 331 - -
Tpr1g2540 1112 Gene3D Ribonuclease Inhibitor 601 727 IPR032675 -
Tpr1g2540 1112 Gene3D Ribonuclease Inhibitor 32 197 IPR032675 -
Tpr1g2540 1112 Gene3D Transferase(Phosphotransferase) domain 1 892 1105 - -
Tpr1g2540 1112 SMART LRR_sd22_2 584 610 - -
Tpr1g2540 1112 SMART LRR_sd22_2 368 394 - -
Tpr1g2540 1112 SMART LRR_sd22_2 296 322 - -
Tpr1g2540 1112 SMART LRR_sd22_2 104 123 - -
Tpr1g2540 1112 SMART LRR_sd22_2 488 514 - -
Tpr1g2540 1112 Pfam Protein kinase domain 815 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2540 1112 ProSiteProfiles Protein kinase domain profile. 814 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2540 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Tpr1g2540 1112 Pfam Leucine rich repeat 346 405 IPR001611 GO:0005515
Tpr1g2540 1112 Pfam Leucine rich repeat 250 309 IPR001611 GO:0005515
Tpr1g2540 1112 Pfam Leucine rich repeat 562 620 IPR001611 GO:0005515
Tpr1g2540 1112 SMART LRR_typ_2 368 391 IPR003591 -
Tpr1g2540 1112 SMART LRR_typ_2 152 175 IPR003591 -
Tpr1g2540 1112 SMART LRR_typ_2 248 271 IPR003591 -
Tpr1g2540 1112 SMART LRR_typ_2 584 608 IPR003591 -
Tpr1g2540 1112 SMART LRR_typ_2 296 320 IPR003591 -
Tpr1g2540 1112 SMART LRR_typ_2 392 416 IPR003591 -
Tpr1g2540 1112 SMART LRR_typ_2 536 560 IPR003591 -
Tpr1g2540 1112 SMART LRR_typ_2 657 680 IPR003591 -
Tpr1g2540 1112 SMART LRR_typ_2 104 128 IPR003591 -
Tpr1g2540 1112 Gene3D Phosphorylase Kinase; domain 1 780 891 - -
Tpr1g2540 1112 SUPERFAMILY Protein kinase-like (PK-like) 791 1087 IPR011009 -
Tpr1g2540 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1098 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2540 Tpr-Chr1 28887462 28892775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2540 32 1089 Receptor kinase-like Gene Family AT4G26540 38.104 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr1g2540 Pkinase 2.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2540 - - gmx:100807838 1757.65