Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2539 ATGGATGATGACTACATCATGGGCATGGAAGAAATGGACATGGATGTTCCTCTCCCCGAAGAACTCGAATTACTCGAATCAACTTATCGAATCTACGAACAACAAGACCAAGAAGACCACTACTTTTACCAACCACCCGAAGATGAAACCGAACAACAACCGCCACAAGATCTCGCTCCTCCTTCCGAACCTCAATCCAACAGCCACAAACGTTCTCGATCGAAATCGAATTCGGATTCCGATTTGGATGATTTGGATTCTTCCGGTGTTGAAAAAAGAGAGAAAGTTAGGGTTAGGGTTGAAGATCCACCGGTTGAAGAGGATTGGCTTCGATACTCTCCTCCTCCTACTACTACTACTTCAGTTGAAGAAGTGAGATTCTCTAAGGAGAAGACGTTATCGCGATTTGCGTCGGAGATTGATGGTGAAGTTATGCCGGTTACTGCGCCTAATGGAGATAGGGTTTATACTAAGCTTGATAGGTTCTATGGAGAAGAGCAAGTGACGAAGCTGAATTGTAGAGGATATTCTTCTGATCTTGCTGTAGCAATTAGTGTTCTGTTTGAAAGGTTGGAGCAAGAGACTTTTGCTAAGACCTTGGAAGCTAGTTCTGTAAGCCAAAGTGTTGTAGATGTTCCTGAAACACTAACAGTCCATGAAAAACTTTGGGTTGATAAATATGCTCCAAAGTCGTTTTCTGATCTTCTTAGTGATGAACAGACAAATCGTGAGGTACTCTTGTGGTTAAAACAATGGGATTCTACCGTGTTTGGATCTGAAATACGAAGTACATCAGACGACGTTTTGTCTGCTTTGAAACGGCATTCTTCAGTTTCCCATAAACCGAAACCTACGGGTTCAAATTTTCCAAGAACAAACGGAGGGAACAATTGGAGTAGTAACAGGTATACAAATTCTAGAAGTACGGCGCAGAGTGGAAATTCGACGAGTATTCAGGATATACGCAATACAAAGTCACGGAATATTGGCGCACCAGAACAGAAGGTCCTTCTGCTATGTGGACCACCAGGTCTCGGAAAAACAACACTTGCACATGTAGCTGCTAGGCATTGTGGATATCACGTGGTAGAGGTTAACGCTAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATCCTTGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGGGATGGAAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCTGATGCAGGGAAGCAACGTTTGGATAACGGACAAATGGAAAGGAAATCATCAAAGAAGGGGCGAAAAACTGCATCCCTGTCAAGACCTGTGATTTGCATATGCAATGACCTATATGCACCTGCCTTAAGATCATTACGCCAAGTGGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGGGTGGTAAGCAGACTAAAATATATATGTAACAAGGAGGGGGTGAAAGCCAGTGCCATTGCACTCACTGCTTTAGCAGAATATACAGCATGTGATATACGCTCATGCTTGAACACTCTCCAATTTCTCTCTAAGAAGAAAGAAACCCTCAATGTGTTTCATATTGCTTCGCAAGTTGTTGGTCAGAAGGACATGTCAAAAAATGTTCTGGACATCTGGAAAGAGTTGTTCCAAAGAAAAAGAACAAAAAAGATGGAAAGAAAATCTCATAATAGCAAAATCTCTGAATTTGATACCTTGTACTCCCTTATATCATACCGTGGTGATAGTGACCTCATTCTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACTGTCAAGTGCCTCAACAGTCTTGAAGTTTATGATCTGTTGCATCAATATATAATGCGTACACAACAAATGCCTCTCCTTGTTCATTTGCCTCCCATAGCAATTATTGTACATCATACAGTAGCTCAAGTTCAGAAGCCAAACATTGAGTGGCCAAAGTCATATCACAGGTATCGAACAACGATGATGGAAAAGATGGACATTTTGAATACTTGGCACTACAAAATATCTCCACATATTGCAAGGCACTTATCACCTACTTCCTTTGTTGAAGACTTAATTTCTCCATTGTTGGATATTCTGTCCCCACCAACCATAAAACCGGTGGCATTACAACTACTATCGGATAAGGAGAAGAATGACATTGCTCAATTAGTTAGCACAATGGTCTCATATGCTATCACATATAAGAAAATGAAATCAGATGCACTGCCTAATACCCTGAAGTATGAAGTAGCAGATGAATTGTCTTTGTCTCTTGTTCCTTCTATCGGTAACTTTGTAAACTTTAAGGATTATACTTCTAACCATTATGTGCTCTCTTTAGCTATGAAGCAGGTTTTAGTGCATGAAGTTGAAAAGCATAAGATTTTACAAGCTAATACTAAAACTGCAACTTTAGCAAATGGAGGGCATGAAGTTAATGAGGCTGAAAATAACATATTAGCCAATACCAAGAATCATGCAGCTGTTGTTGATATGAAAACCATTCAAAGTCAAACTAATGTTTTAGCAAGGAAATCAAATGAATATCCCAAGACAGTTTCACCAAACATGAATCCCACTAAAATTGCATATGCAACAGACAATGCGAAACTTCTAGACATGGGAAATAAGAAAAAACCATCTAGGAGTTCCTTAAGTTTCTTTGACAGGTTTAAAAAGTCAAGTGTTAAGGGACTCCAAAACGATGACAGATCTGTACAGAAAGAAACTACATCAGAGAAAGCTCAAAGCCCTTTACTTTTTAAATTTAATGAGGGTTTTACAAATGCAGTCAAAAGGCCTGTTCGAATTCGTGAATTTCTGTCCTAG 2895 0.399 MDDDYIMGMEEMDMDVPLPEELELLESTYRIYEQQDQEDHYFYQPPEDETEQQPPQDLAPPSEPQSNSHKRSRSKSNSDSDLDDLDSSGVEKREKVRVRVEDPPVEEDWLRYSPPPTTTTSVEEVRFSKEKTLSRFASEIDGEVMPVTAPNGDRVYTKLDRFYGEEQVTKLNCRGYSSDLAVAISVLFERLEQETFAKTLEASSVSQSVVDVPETLTVHEKLWVDKYAPKSFSDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSDDVLSALKRHSSVSHKPKPTGSNFPRTNGGNNWSSNRYTNSRSTAQSGNSTSIQDIRNTKSRNIGAPEQKVLLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEVLLKMISAERKPDAGKQRLDNGQMERKSSKKGRKTASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVSRLKYICNKEGVKASAIALTALAEYTACDIRSCLNTLQFLSKKKETLNVFHIASQVVGQKDMSKNVLDIWKELFQRKRTKKMERKSHNSKISEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCLNSLEVYDLLHQYIMRTQQMPLLVHLPPIAIIVHHTVAQVQKPNIEWPKSYHRYRTTMMEKMDILNTWHYKISPHIARHLSPTSFVEDLISPLLDILSPPTIKPVALQLLSDKEKNDIAQLVSTMVSYAITYKKMKSDALPNTLKYEVADELSLSLVPSIGNFVNFKDYTSNHYVLSLAMKQVLVHEVEKHKILQANTKTATLANGGHEVNEAENNILANTKNHAAVVDMKTIQSQTNVLARKSNEYPKTVSPNMNPTKIAYATDNAKLLDMGNKKKPSRSSLSFFDRFKKSSVKGLQNDDRSVQKETTSEKAQSPLLFKFNEGFTNAVKRPVRIREFLS* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2539 964 CDD AAA 313 426 - -
Tpr1g2539 964 MobiDBLite consensus disorder prediction 68 101 - -
Tpr1g2539 964 Gene3D - 484 554 - -
Tpr1g2539 964 Pfam ATPase family associated with various cellular activities (AAA) 337 463 IPR003959 GO:0005524|GO:0016887
Tpr1g2539 964 MobiDBLite consensus disorder prediction 32 46 - -
Tpr1g2539 964 MobiDBLite consensus disorder prediction 281 326 - -
Tpr1g2539 964 Gene3D - 220 482 IPR027417 -
Tpr1g2539 964 MobiDBLite consensus disorder prediction 428 449 - -
Tpr1g2539 964 MobiDBLite consensus disorder prediction 29 101 - -
Tpr1g2539 964 CDD HLD_clamp_RFC 484 539 - -
Tpr1g2539 964 SMART AAA_5 333 487 IPR003593 -
Tpr1g2539 964 MobiDBLite consensus disorder prediction 274 326 - -
Tpr1g2539 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 539 IPR027417 -
Tpr1g2539 964 MobiDBLite consensus disorder prediction 428 447 - -
Tpr1g2539 964 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 12 963 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2539 331 531 Core DNA Replication Machinery Family AT5G22010 31.944 1.65e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2539 K11269 - gmx:100791474 1297.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2539 1 28838468 28859651 Tpr1g2539 1 28838468 28859651 ECH