Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2538 ATGGCTCTGGAACTTGTAGCTGGACCTTTAATGGGGGCTGTTTTCAATGTGTTATTTGAAAGGATAGCTTCTTCTGAGGTTGTAAACTTCTTTAAGAACAAAAAAACTGAGAATTTACTGAAAAGATTGAAGATCATCTTGTTATCAATCCATGCTGTACTCAATGATGCAGAAGAAAAACAAATGAAAAATGAAGCTGTGAAAGAGTGGCTTGAGGAGCTTAAAGATGTTGCTTTTGATGCTGATGATCTATTTGATGAGATCTTTACAAAGGCCAAAGAGGTAAACACATTCAACTCAACTTCAACAATTTTTCATGATAAAGAGCTTGAAAAGAAGATAGAAGATGTTTATGAAAGATTAGAGTTTGTTATAAAATTGAAAGAAGTACTTGATTTGAAGGTGTGTAAGGAAGTTAAAGTGACACATAAGAGACCAACTTCATCTGTTGTTGAAGCATGTGATGTGTATGGAAGGGATAATGATAAAGATATCTTAGTTAACTTGTTATTGTCACATGATTTTGATGATGAAAAGCTAGGTGTTATTCCAATTGTTGGTATGGGAGGAATTGGGAAAACTACTTTAGCTCAAGTTGTATATAATGATGATAGAGTACAGAAGGAGTTTGATCTCAAAGCTTGGATTTATGTCTCTGAAGAATTTGATATTTGCAAGATCACAAAGAATCTTTTGGAGGTTATTACTTTGTGTAGTTGTGATGTTGAAGATTTAAATTCAATACAAAGGAATTTGAAAATGTATATACAGAAGAAAAAGTTTTTGTTTGTTTTGGATGATGTTTGGGATGAAAACTATGAGAATTGGGACAAATTCAGGAGTCCGTTTAAACATGGAGGGGCTAACGGAAGTAAGATTATCGTTACTACTCGAAGTAGGAATGTTGCATCTATCATGCAAACGTTTCCGCCTTATAATCTTACTGAATTGTCTAATGACGATTGTTGGGAATTGTTTTCAAACCACGCGTTCGGTTATGGCCATAAGGATTTAAATGTTAATCAACAAAGTGTCTGCAAAGTTGGAAGAGAAATAGTTAGAAAGTGCAAAGGGTTGCCTTTGGCTGTGAAGACACTTGCAGGACTTTTGAGGTCAAAAAGTGATACACAAGAATGGCTTAAAGTCCTGAGTAGTGAGATATGGGATTTACAAGATCATGAGAGTAATATTCTTCCAGCTTTGAGATTAAGTTACCATTATCTCCCTTCGCATTTAAAGAGATGTTTTGCATATTGCGCAATTTTTCCAAAAGATTATGAATTTGATAAGGAGAAGCTAATTTTGTTGTGGATGGCAGAAGGGTTGCTCCATCAGTCAAAAAGACATAGAAGAATTGAAGAAGTTGGAAATGAGTATTTTTGTGAATTAGTATCAAGATCATTTTTTTACCAATCAAGAAGTGGCAAATCATCTTTCTTAATGCATCATCTTATAAATGACTTGGCTCAATTTGTATCTGGAACGTTTTCTGTGAGAATAGAAGATAACAATTCTGATCAAGTTATGGAAAGAACTCATTATTTGTCTCACATTATTTCACATTGTTCTTCATATGTATACCTGAAAGATGTTAGCAAAGCGAACCGTCTACGTACCTTTATGCAAATAAGAACGATAGGTACATCCATAGACATGTTCGACAACATGCCAAATGATCTTTTGACAAAGCTAAGGTACTTAAGGGTGTTAACCTTGGTAGGTGCTTATTTCTACAATTTACCTGATTCAATAGGTGAACTAAAACATCTGCGCTCTCTAGAAGTGTCTGACACCGAGATTACAAGGTTACCTGAATCCATCTGCAGTTTGTACAATTTGCAAACACTCAAGTTAGTTGGATGTTATAATCTTATTGAACTTCCAAAAGATATTCATAAACTTGTCAACTTGCGCTACTTGGATATTAGAGGCACTTGTTTGAAGTCGATGCCATTGAAAATCGGTGAATTGAAAAACCTTCAAAAGTTGAGTGACTTTTTTGTTGGTGAAGATCATGGTTCTTCCATTAGTGAACTGGGAGAGCTATGTAATTTACATGGATCTTTGTTCATTCATGACATAGAACATGTTGTCAATTATAAGGATTCTGAGAAGGCAAAATTGAAGGAAAAACATGGCCTTGAAAAATTGTCTTTGGATTGGGGTGGACGTGGTGATACCGATAACTCACAGCATGAAAAGATAATACTGCGCAGCTTCGAACCACATTCCAATTTGAAGGAGCTTGATATCAATGACTATCCAGGCACAGAATTTCCAGATTGGTTAGGGGACTACTACTTTTGCAACATGGTGTCCTTAAAGCTTAAAGGATGTAAATATTGCTACAAATTGCCTCCACTCGGACAACTGCTGATGTTGAAAGAGCTTCATATTATTAAATTTGAAGGGCTAATGAGTGTAGGATCCGAGTTTTACGGAAATAGAACTTCTTCAAGTACTGATAGCTTTCCTGCACTGGAAATTCTAAGGATCGAGTCTATGTCAGTATGCGAGAAATGGTGTTTTGATGCGGACAATGTTGGCAGCAGAGCTTTCAGTCATCTTAGGGAGTTTTATATTGAAAACTGTCCCAAACTGACAGGGAACTTACCAAGTAGTCTTCCATCTTTGACATTACTTGTTATCAGAGATTGCAAACGTTTGCTTTGTCCACTTCCGAAATCTCCGAGTCTGCGCGTGCTCAACATTCAGAATTGTCAGAAGCTAGAATTCCATGTACATGCACCTTGGTACCACCAATCACTTACATCTTTGTACTTGATTGATAGCTGTGACTCACTCATGTTCTTGCCTTTAGATCTTTTCCCAAACCTCAAGTCTTTAGATATTTGGGGATGCAAAAATCTGGAAGAACTTACTGTTTCAGAATCAGCATCAGATGTTTCTCCTCCAAATTTCAAATCTCTCAATTCCATGTGCATAAGACATTGTCCAAATTTCACATCATTTCCTAAGGGTGGATTTGCAGCTCCAAAGCTTAACTTGTTAACCATAAACTACTGTCAGAAATTGAATTCTCTGCCTGAAAATCTGCATGAGTTAATGCCAAGCTTGAAAGAACTTCAACTGAGGGGTTGTCCACAAATTGAGTCATCTACTATGAGGCCGCTCAGGATTCGGATTAGTAACAAACTCATGGAAGGGAAACAAAACCACTCTGATCCTCTCTTTTCAAGGTTGGAAGGTCTAGTTTCTGGTCATAGTCCTTCATCAAGCTAG 3243 0.3648 MALELVAGPLMGAVFNVLFERIASSEVVNFFKNKKTENLLKRLKIILLSIHAVLNDAEEKQMKNEAVKEWLEELKDVAFDADDLFDEIFTKAKEVNTFNSTSTIFHDKELEKKIEDVYERLEFVIKLKEVLDLKVCKEVKVTHKRPTSSVVEACDVYGRDNDKDILVNLLLSHDFDDEKLGVIPIVGMGGIGKTTLAQVVYNDDRVQKEFDLKAWIYVSEEFDICKITKNLLEVITLCSCDVEDLNSIQRNLKMYIQKKKFLFVLDDVWDENYENWDKFRSPFKHGGANGSKIIVTTRSRNVASIMQTFPPYNLTELSNDDCWELFSNHAFGYGHKDLNVNQQSVCKVGREIVRKCKGLPLAVKTLAGLLRSKSDTQEWLKVLSSEIWDLQDHESNILPALRLSYHYLPSHLKRCFAYCAIFPKDYEFDKEKLILLWMAEGLLHQSKRHRRIEEVGNEYFCELVSRSFFYQSRSGKSSFLMHHLINDLAQFVSGTFSVRIEDNNSDQVMERTHYLSHIISHCSSYVYLKDVSKANRLRTFMQIRTIGTSIDMFDNMPNDLLTKLRYLRVLTLVGAYFYNLPDSIGELKHLRSLEVSDTEITRLPESICSLYNLQTLKLVGCYNLIELPKDIHKLVNLRYLDIRGTCLKSMPLKIGELKNLQKLSDFFVGEDHGSSISELGELCNLHGSLFIHDIEHVVNYKDSEKAKLKEKHGLEKLSLDWGGRGDTDNSQHEKIILRSFEPHSNLKELDINDYPGTEFPDWLGDYYFCNMVSLKLKGCKYCYKLPPLGQLLMLKELHIIKFEGLMSVGSEFYGNRTSSSTDSFPALEILRIESMSVCEKWCFDADNVGSRAFSHLREFYIENCPKLTGNLPSSLPSLTLLVIRDCKRLLCPLPKSPSLRVLNIQNCQKLEFHVHAPWYHQSLTSLYLIDSCDSLMFLPLDLFPNLKSLDIWGCKNLEELTVSESASDVSPPNFKSLNSMCIRHCPNFTSFPKGGFAAPKLNLLTINYCQKLNSLPENLHELMPSLKELQLRGCPQIESSTMRPLRIRISNKLMEGKQNHSDPLFSRLEGLVSGHSPSSS* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2538 1080 SUPERFAMILY L domain-like 537 954 - -
Tpr1g2538 1080 PANTHER DISEASE RESISTANCE PROTEIN RP 876 1039 IPR044974 GO:0006952
Tpr1g2538 1080 PANTHER DISEASE RESISTANCE PROTEIN RP 23 909 IPR044974 GO:0006952
Tpr1g2538 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 419 IPR027417 -
Tpr1g2538 1080 Gene3D - 316 403 IPR042197 -
Tpr1g2538 1080 Gene3D Ribonuclease Inhibitor 955 1055 IPR032675 -
Tpr1g2538 1080 Pfam NB-ARC domain 176 385 IPR002182 GO:0043531
Tpr1g2538 1080 SMART LRR_CC_2 1023 1048 IPR006553 -
Tpr1g2538 1080 SMART LRR_CC_2 853 881 IPR006553 -
Tpr1g2538 1080 SMART LRR_CC_2 943 968 IPR006553 -
Tpr1g2538 1080 CDD RX-CC_like 49 121 IPR038005 -
Tpr1g2538 1080 PANTHER OS05G0414200 PROTEIN 23 909 - -
Tpr1g2538 1080 PANTHER OS05G0414200 PROTEIN 876 1039 - -
Tpr1g2538 1080 Pfam Rx N-terminal domain 11 96 IPR041118 -
Tpr1g2538 1080 Gene3D Ribonuclease Inhibitor 529 910 IPR032675 -
Tpr1g2538 1080 Gene3D - 404 491 IPR036388 -
Tpr1g2538 1080 Gene3D - 12 124 - -
Tpr1g2538 1080 PRINTS Disease resistance protein signature 182 197 - -
Tpr1g2538 1080 PRINTS Disease resistance protein signature 255 269 - -
Tpr1g2538 1080 PRINTS Disease resistance protein signature 356 370 - -
Tpr1g2538 1080 PRINTS Disease resistance protein signature 941 957 - -
Tpr1g2538 1080 Gene3D - 136 309 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2538 Tpr-Chr1 28833087 28837269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2538 567 663 WRKY Transcription Factor Family AT4G12020 32.653 2.98e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2538 - - ccaj:109812375 1655.19