Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2520 ATGGAGATTGATGACCTTCCATACCAACTTCCAGAGGGTTTAAGAGTCTTTGTGATTGATCATGACACCACTCAACTTCATGTCATTGCGAATATGTGTTTTCAATGCAACTATAGAGTTACCACATGCATTGTGGCTTCTTTTGCCCTACATCTTTTGAGAGAAACAAATGGTCGTTTTTTTGATGTCATACTAATTGAAGCTCAAATGTCGGACATGGATTCGTACCAGTTTTTGCAACGTGTTACACAAGAAATCAAAATTCCAGTCATTATGATGTGTGCTGATAACACAACAAGTGAAAGGATGAATGCTATTGAAAAAGGAGCTTGTGATTATTGGCTAAAGCCTTTGAATGTGAATCATATCAACAATATGTGGCAACAATTCAAAAACATGATCAAATTCAAAGAATATTTTAGGTAA 426 0.3545 MEIDDLPYQLPEGLRVFVIDHDTTQLHVIANMCFQCNYRVTTCIVASFALHLLRETNGRFFDVILIEAQMSDMDSYQFLQRVTQEIKIPVIMMCADNTTSERMNAIEKGACDYWLKPLNVNHINNMWQQFKNMIKFKEYFR* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2520 141 Pfam Response regulator receiver domain 16 125 IPR001789 GO:0000160
Tpr1g2520 141 ProSiteProfiles Response regulatory domain profile. 15 131 IPR001789 GO:0000160
Tpr1g2520 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 129 IPR045279 GO:0009736
Tpr1g2520 141 CDD REC_typeB_ARR-like 16 129 - -
Tpr1g2520 141 SUPERFAMILY CheY-like 12 132 IPR011006 -
Tpr1g2520 141 SMART REC_2 14 127 IPR001789 GO:0000160
Tpr1g2520 141 Gene3D - 9 135 - -
Tpr1g2520 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 11 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2520 Tpr-Chr1 28621732 28622157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2520 10 129 Response Regulator Gene Family AT4G16110 40.833 7.04e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g2520 Response_reg 4.8e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2520 - - mtr:MTR_8g093040 145.206