Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2500 ATGACAACAGCAAAAGAAACTTCAAACTTAGATCTCATACGCCATCATCTCTTAGGTGATAACATATCTGTTAAACTTGAAAACCCTTCACCAGAATTTGATTTATATTCATATATTTCAGAAAACACAAATTTTTTCACTTTCCTTGAAGGCTATGATTTAGTAGCAGATATGGAATTCTTTGGTAACACTTCTCAAACTGAAACAAAACCTTCAAAGGAAATAAAGAAAACAAACTCACCCGAACCGAAACCAAAACTGGAACCGATTAGTACTACTATGGTGTCTTCAAAGAAGATTAAGAAAGAAAAAGAGTTTGTTGATGAAACAAGAAGATATAGAGGTGTAAGGAGAAGACCATGGGGGAAATTTGCAGCAGAGATACGTGATCCATCAAAGAAAGGAAGTAGAGTTTGGTTAGGTACATTTGATTGTGAAATTGATGCTGCAAAAGCTTATGATTCTGCTGCTTTCAGAATGAGGGGTCAAAAAGCTATTTTGAATTTTCCTTTGGAGGCTGGTGAGTGTGATCCTAAGCCTAATAGTTGTGGTAGAAAAAGGAGAAGAGAAAGTGATCAAGTTGAAGCTTCAAGAAGTTCAACTTCAAGTTCATGA 615 0.3545 MTTAKETSNLDLIRHHLLGDNISVKLENPSPEFDLYSYISENTNFFTFLEGYDLVADMEFFGNTSQTETKPSKEIKKTNSPEPKPKLEPISTTMVSSKKIKKEKEFVDETRRYRGVRRRPWGKFAAEIRDPSKKGSRVWLGTFDCEIDAAKAYDSAAFRMRGQKAILNFPLEAGECDPKPNSCGRKRRRESDQVEASRSSTSSS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2500 204 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Tpr1g2500 204 MobiDBLite consensus disorder prediction 65 85 - -
Tpr1g2500 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 196 - -
Tpr1g2500 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 196 - -
Tpr1g2500 204 CDD AP2 120 170 IPR001471 GO:0003700|GO:0006355
Tpr1g2500 204 Gene3D AP2/ERF domain 111 172 IPR036955 GO:0003700|GO:0006355
Tpr1g2500 204 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Tpr1g2500 204 PRINTS Ethylene responsive element binding protein signature 152 172 IPR001471 GO:0003700|GO:0006355
Tpr1g2500 204 SUPERFAMILY DNA-binding domain 112 172 IPR016177 GO:0003677
Tpr1g2500 204 MobiDBLite consensus disorder prediction 177 204 - -
Tpr1g2500 204 MobiDBLite consensus disorder prediction 179 195 - -
Tpr1g2500 204 Pfam AP2 domain 112 162 IPR001471 GO:0003700|GO:0006355
Tpr1g2500 204 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2500 Tpr-Chr1 28305988 28306891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2500 93 199 AP2-EREBP Transcription Factor Family AT5G07580 58.716 3.14e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g2500 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2500 - - ccaj:109813158 257.299