Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2499 ATGGCAATGATTTGGGGTCCACTTTTTCTTTGCTTTGGAGCTCCACCTGGCTATCAGTGTCAAATGGATCCTAATCATTTTCATTATCAACAAGCTATGTTCAATTTCATGCAAAATTATCAAAATCCTAATCCTCAAAATTCTCAAATTCCACCGATGCCACCATTTTCTACTCAAGTTCCACCATTTTCTACTCAAGATCCAATTGTGGGAGTTGATCAAAAGGCTGAGAGTTTTTGGGTAAGAGTCGCTGCCAATTATAACCAGTATCGTGGGGAATCGCGGGAAAAGTTAAAGGGACAATTAAAATGTCGATGGCATCGAATAAATGGCTTGGTTCAAAAATTTGTTGGGTGTTACAAACAAGCTGTTAATGGAAAGAAAAGTGGGACATCGGAGAACGATGTCATGGCCGCTGCAAATGCATTTTTTGCTCAGGATCAAGTGAGGCATCATCGGAGAACCCAAATACACCTTCAAGTTATGAGTTTAACTCATCATCACCAATGGAGTTTAACTCAATTTATGGACGACAGTGATGAAGAACAAGAGCTTCAGAATGAACTTCAATCTGGAAGTTCCTCTAGGCCAAAGAAAAGAACAACGATAGATCGAGGTCGTGAAGAAGGGCATAATCGATTGTTCAATGACTACTTCTCGGAAAATCCAGTATACACAGATGTTCAATTCCGAAGAAGGTTCAGAATGCATAGGCATGTATTCCTTCGAATTGTAGATGCCCTTGGAAATCATGATGAATATTTCCAAATGAGGGTCGATGCAACTGGTAAAATGGGTCTTTCACCATTGCAGAAATGTACATCTGCTATTCGTATGTTGGCGTATGGGTCTGCTGCTGACATTGTAGACGAGTATGTTCGAATCGGTGAAAGCACTTCAATTGAGTGCTTACAAAGATTCGTTCAGGGCGTGAATGCTGTATTTGGGGCTGAGTATTTGAGAAAGCCTAACAACACTGATGTTGAACATCTTTTACAAATGGGAGAGTCACGTGGCTTTCCAGGTATGTTGGGTTCTATTGATTGTATGCATTGGGAATGGAAAAATTGTCCTGTTGCATGGAAAGGACAATTTTGTCGAGGTGATCATGGTAAGCCCACAATCATGCTTGAAGCAGTGGCATCACAAGACTTATGGATTTGGCATGCTTTTTTTGGTATTGCAGGTTCAAACAATGACATTAATGTGTTAAACCAATCTAATGTGTTTAACGATATTTTGGAAGGACATGCTCCCAATGTGCAATATACAATCAATGGGACACCATATAATATGGGGTATTATTTAGCAGATGGTATATATCCTGAGTGGGCTACATTTGTCAAAACCATTTCAATGCCACAAGGAGAAAAGAAAAAGTTATTTGCTCAACATCAAGAATCAGCTAGAAAAGATGTGGAGCGGGCATTTGGAGTGCTTCAATCTCGATTTGCAATTATACGTGGCCCAGCACGTGCTTGGCACATGGGCACCCTCAAGCATACCATATATGCATGCATCATATTGCACAACATGATTGTTGAAGACGAACGACATACATATGGAGGTAATTTTGATTACTCTTATGATAATGTGGATGACAACAACTCAACAACCGAAACATTTAGCGGTCCTCATCCGAATCTTGCAACAAGACTACAAAGAAGAGCAAGTATTCGAGAAAAACAAGTTCATCGTCAACTTCAAGGAAATTTAGTCGAGTATATTTGGGAACGTTTTGGACATGATAATAATAATAATAATAATAAACACTATAGAGGTGTTAGAAGAAGACCATGGGGAAAATTTGCTGCAGAAATTCGTGACCCTAATAAAAAAGGTTCAAGAGTATGGCTTGGAACCTTTGAAACAGCCATAGAAGCTGCAAAAGCTTATGATAAAGCTGCTTTTCAAATGAGAGGAAGTAAAGCTATAATGAATTTTCCTTTAGATGTTGCTACTGATTCAATAGAATCATCACTTTCTAGTTGCATAAAAGTTGGTGAGAAAAGACAAAGAGATGAAGGAAACTATGTTGAGATCAATAATAGTAGTAATAAGCAAGTTAAGAAAGAAGAAGGGGTTTCAATTTGTCCTTTGACTCCTTCATGTTGGAAAGGTTTTTGGGATACTGATGTTATGGGAACTATCTTTAGTGTTCCTCCTTTGTCACCTTTATCTCCACTCATGGGATTTTGA 2199 0.387 MAMIWGPLFLCFGAPPGYQCQMDPNHFHYQQAMFNFMQNYQNPNPQNSQIPPMPPFSTQVPPFSTQDPIVGVDQKAESFWVRVAANYNQYRGESREKLKGQLKCRWHRINGLVQKFVGCYKQAVNGKKSGTSENDVMAAANAFFAQDQVRHHRRTQIHLQVMSLTHHHQWSLTQFMDDSDEEQELQNELQSGSSSRPKKRTTIDRGREEGHNRLFNDYFSENPVYTDVQFRRRFRMHRHVFLRIVDALGNHDEYFQMRVDATGKMGLSPLQKCTSAIRMLAYGSAADIVDEYVRIGESTSIECLQRFVQGVNAVFGAEYLRKPNNTDVEHLLQMGESRGFPGMLGSIDCMHWEWKNCPVAWKGQFCRGDHGKPTIMLEAVASQDLWIWHAFFGIAGSNNDINVLNQSNVFNDILEGHAPNVQYTINGTPYNMGYYLADGIYPEWATFVKTISMPQGEKKKLFAQHQESARKDVERAFGVLQSRFAIIRGPARAWHMGTLKHTIYACIILHNMIVEDERHTYGGNFDYSYDNVDDNNSTTETFSGPHPNLATRLQRRASIREKQVHRQLQGNLVEYIWERFGHDNNNNNNKHYRGVRRRPWGKFAAEIRDPNKKGSRVWLGTFETAIEAAKAYDKAAFQMRGSKAIMNFPLDVATDSIESSLSSCIKVGEKRQRDEGNYVEINNSSNKQVKKEEGVSICPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMGF* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2499 732 Gene3D AP2/ERF domain 590 651 IPR036955 GO:0003700|GO:0006355
Tpr1g2499 732 MobiDBLite consensus disorder prediction 181 207 - -
Tpr1g2499 732 PANTHER OS06G0597250 PROTEIN 188 582 - -
Tpr1g2499 732 PANTHER UNCHARACTERIZED 188 582 IPR045249 -
Tpr1g2499 732 Pfam Plant transposon protein 318 521 IPR006912 -
Tpr1g2499 732 Pfam AP2 domain 591 641 IPR001471 GO:0003700|GO:0006355
Tpr1g2499 732 SMART rav1_2 591 655 IPR001471 GO:0003700|GO:0006355
Tpr1g2499 732 SUPERFAMILY DNA-binding domain 591 651 IPR016177 GO:0003677
Tpr1g2499 732 ProSiteProfiles AP2/ERF domain profile. 591 649 IPR001471 GO:0003700|GO:0006355
Tpr1g2499 732 CDD AP2 590 649 IPR001471 GO:0003700|GO:0006355
Tpr1g2499 732 PRINTS Ethylene responsive element binding protein signature 592 603 IPR001471 GO:0003700|GO:0006355
Tpr1g2499 732 PRINTS Ethylene responsive element binding protein signature 615 631 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2499 Tpr-Chr1 28265602 28274765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2499 590 728 AP2-EREBP Transcription Factor Family AT5G61600 55.034 2.29e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g2499 Plant_tran 1.4e-109 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2499 - - ccaj:109812481 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3506 6 37954834 37960136 Tpr1g2499 1 28265602 28274765 PCT