Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2498 ATGGGCTCCGTCGACAAATACCACGTCATCGAGATAGTCGGCGAAGGTTCCTTCGGTAAAGTCTACAAAGGAAGACGCAAATACACCGGACAGACTGTCGCTATGAAGTTCATCATGAAGCACGGTAAAACTGAAAAGGATCTTCACAATTTGAGACAAGAAATCGAGATATTAAGGAAGTTGAAGCATGAAAATATTATCCAAATGCTTGATTCCTTTGAAACCCCACAAGAGTTTTGTGTAGTCACAGAGTTCGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGATAAATGCCTTCCTGAGGAACAAGTCCAAGCAATTGCAAAGCAATTGGTAAGAGCCTTACATTATTTGCATTCCAATCGGATCATCCATCGTGATATGAAGCCCCAAAATATCCTCATTGGTTCCGGATCGATTGTCAAGCTTTGTGATTTTGGATTTGCACGTGCGATGTCCACAAATACAGTTGTTTTGAGATCTATAAAAGGCACTCCATTATACATGGCTCCGGAACTTGTCCGGGAACAACCTTACAACCACACCGTAGATTTATGGTCTCTTGGTGTTATATTGTATGAGTTATTCGTAGGCCAACCACCGTTTTACACAAATTCTGTTTATGCTCTCATCAGACACATTGTTAAGGATCCAGTTAAATATCCTGAACATATGACTCCAAATTTCAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCAGAAAGTAGACTAACTTGGCCGGCTCTTCTTGAACACCCGTTTGTTAAAGAATCTAACGACAAAACTGAAGCCAGGGAATTGCGTGAGATAAGTGGTTCACCAAGGGACAACAATATAACACAAAGGGTTGAAGCTAAAACGATTCAAACTTCAACAGGTTTGGAAGAGCATATTGCTTCACCACTTCAGAATGAAACTCAGTTAAATGTTCCTAACATGAACAAAACCAATACTAAAGTGCTGGATGAGTCTCCTGGATTTTCAAATCAAAATGATGTAGGAGAGTCAGGCTGCCGAAGACTTGACAGACTTGAAAGTAACTCTCGCACTGCCAAAGGTGCAAAAGTAATTGGTCAAGACAATGAGGCATTGGGACATGTTCTACAACCACTGAAACGATGGTCAAAGGGATCTCAAAATATTGTCAGTGATCAAGATCTTCCTGCTTCAAACCAGTCACTGAGAATTCTGTCAAATCTAGTTGCTGCCGGTGTCTTCAGTTCTATTGGACAAATAGATGAAATAATAAGCGAACTCCTTTTGTTTATCAAATATATTTTAGCAATGAAATCTGCTGAAGTTTTTGACTTGTTAACAAAGGGCTTCTCTATCACTAAAATTTTCCTAGATAATGGTGGGAGTTCCTTTTCAAGCTCATATTTTAATCACTGGGTTGAATTGGTTGAAATCTATTCTCAGGTTGTAACTTCGAACAATGATGCATCTGGAAGAGTTCTTTATGAGTCTAGTGCCTGCATTACGGTCATTTTGTCTAAAGTTGCTCAGGTGCTTAGATTATCTCAAGTGTCAGGCTCAGAGACACTGAACGCAACAGCTAACAGAATTATAGAGCATGCAAAAACATCTGGTTTAGTAGACCATTTGTGCCAGTGCTTAGCGACTTCAGGCTCGAGTCTTATTGCTGGTTCTTCCAATATGCTACGGGCTGCTTCTGAAGCATGCAGAGCTGCCTGGTCCTTGATTAATGCTCTGGACACCCTTTTTAATAAAAAAAGTGCCATTTTGTTTCCAATCAGTGCATTGCCGAGTCATTTTTTGAAGAGGACAGAAATTGTGGATCACAGACAAGATCCCTTGTACGATGAAGAATCAACAAAAATGGTTGATGCAGTGACAAGAGCATTCGTGAGATCCAAAGCTGTTCAGGTTGCTGTGTACTATTGTTTTCATCAGCGCATTGAGTCCGCTACGATTTGTGGTCTTCAGCTTTTGTCTAGGTGCTGCCTCCATAGTGGAATTGTTCCAGCCGTCCTTTGTGGTATTCCCAGTTCGCTTCCTGTGACCACTGTTGTTAGTGGTGGTGGTGATGGAACAATTGTTTCAGAGATTTTCTCGGTTTTGTCAATATGCAGTTCCTCTCTCAACAAAGATGAACACAGTGTAGAACCAAGTAACACTAAATGCAAATTAGCAAATCCTTCTGCTCTGATTCGTCATTCATGTCTTATTCTTACAATAATTGCACAATATTTGAAGTCAACTGGAAGAAATTCTGCAATTTTTATGCTCACCAACTCACCAAAGAAGCAGCTTGCTCGACTCTCAGTTCTTGCTCATCATGTTTCTTATGATGATAAAACAAAAGCCTCTTTCCAACTTCAATGTTCATCAGCCATGTTGGCTTTGGCATCCATTCTTTCGCTCGAATCTGGGACTTTGGTTGAGTCTCCGATATCTGAAATTGCTACGCCTTTAATTCCTCGAGCTTCTACACTAAGTGATCATCTAAAATTTTCTTCAGGAAATGAAAATGAACCGGGCCCTGGTAATTTTACTGGGAAGCTCCCATATTGGCTAGGGGTAAGAGATGGGTGTGTTGGTCTTGTAGATTCCAAACTCAAGTTGGGAGGACCATTAGCTATTCAGCAGTTGTGTGCAAGTGGTATACCACTACTTCTAATCGGCTTATTAAGCGATGTATTTTTAAATCCTTCTCAAGAAAACGAGTGCCTAAATGATAGAGTTGGATTATCTCCTATAGGCGTTGTGTGGACAATTTCATCATTATGTCATTGTCTCTCTGGTGGTGCTTTGATTTTTCGTCAGATTTTGATTAGGAATGAACATGTTAAGCTTGTATCCAACTTAATATGTGATGTGCATCTTAAATTGATAAAATGCTGGACCGGACCTGGAGGAGGGAGAGCAGGAGTCAGAGATATCATAAATGCAGTCATAGACCTCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCTGGCTTGCCATCAGCCACTGCTTCTGTCAGCAGTGGGTTTCTTCTTAACGTTGGTTCCCCTGGTCAGAGAGTTTACATGGAAGATAAGGATACAGTTAAGGCAATAGAAGAAGACATGAGCAAATACATTAAGATCCTCGTGGAGGTTGGTGTGCCTAGTATTATCCTTCGATGCCTCGATCATATGGAGTTGCACGATTTGGGCAAGCCTGTGGCTTTCCTTGCTAAAATGGTGTCCCAGCGACCTTTAGCAGTTCAACTTGTGAGTAAAGGTCTTTTGGATCCAAATAGAATGAGAAGGTTGTTTGACTTGTCTGGGCCAAAAGAGGTTTTGCTGGATACTCTTATGATAATTTCCGATCTTGCTCGTATGGACAAGGGATTCTATGAGTACATTAAAGGTGCTTCTATTTTGGAGTTCTTAAAAGATTTTCTTTCACACGAGGATCCGAATGTGCGTGCCAAAGCTTGCAGTGCTCTCGGTAATATGTGTCGCCACAGTGCCCTGTTTTACAGTTCTCTTGCAAGATATCAAATTATTAGTATCCTCATTGAAAGATGCTCTGATCCGGACAAACGAACAAGGAAGTTTGCTTGTTTTGCTATTGGAAATGCGGCTTACTACAATGACGTGTTGTATGAAGAGTTGAGGAGGTCGATTCCTCATTTGGCCAAATTGTTGCAAGTGGCAGAGGAAGACAAAACCAAGGCAAATGCTGCAGGTGCACTTAGCAATCTGGTTCGCAACTCTGACAGACTTTGTGGAGACATTGTGTCTAAAGGAGCAGTTCAGTCTCTTCTGGAGTTAATTTCCGATTATGCAGTATCCGCTCTAAATCCAAGCAGAAATGATTCAACAGGCGAGTCTCCTTTAAAGATTGCTCTCTTTTCCTTGGCAAAGATGTGTGCCCATCCACTCTGCAGACAGTTCATGCGTTCATCACCTTTGTTCCCTGTAATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATTGCCAAATATGCATCTGTGATTATTAGCAAAGTTGAACCTTGA 4002 0.4108 MGSVDKYHVIEIVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKTEKDLHNLRQEIEILRKLKHENIIQMLDSFETPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGSGSIVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPEHMTPNFKSFLKGLLNKAPESRLTWPALLEHPFVKESNDKTEARELREISGSPRDNNITQRVEAKTIQTSTGLEEHIASPLQNETQLNVPNMNKTNTKVLDESPGFSNQNDVGESGCRRLDRLESNSRTAKGAKVIGQDNEALGHVLQPLKRWSKGSQNIVSDQDLPASNQSLRILSNLVAAGVFSSIGQIDEIISELLLFIKYILAMKSAEVFDLLTKGFSITKIFLDNGGSSFSSSYFNHWVELVEIYSQVVTSNNDASGRVLYESSACITVILSKVAQVLRLSQVSGSETLNATANRIIEHAKTSGLVDHLCQCLATSGSSLIAGSSNMLRAASEACRAAWSLINALDTLFNKKSAILFPISALPSHFLKRTEIVDHRQDPLYDEESTKMVDAVTRAFVRSKAVQVAVYYCFHQRIESATICGLQLLSRCCLHSGIVPAVLCGIPSSLPVTTVVSGGGDGTIVSEIFSVLSICSSSLNKDEHSVEPSNTKCKLANPSALIRHSCLILTIIAQYLKSTGRNSAIFMLTNSPKKQLARLSVLAHHVSYDDKTKASFQLQCSSAMLALASILSLESGTLVESPISEIATPLIPRASTLSDHLKFSSGNENEPGPGNFTGKLPYWLGVRDGCVGLVDSKLKLGGPLAIQQLCASGIPLLLIGLLSDVFLNPSQENECLNDRVGLSPIGVVWTISSLCHCLSGGALIFRQILIRNEHVKLVSNLICDVHLKLIKCWTGPGGGRAGVRDIINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNVGSPGQRVYMEDKDTVKAIEEDMSKYIKILVEVGVPSIILRCLDHMELHDLGKPVAFLAKMVSQRPLAVQLVSKGLLDPNRMRRLFDLSGPKEVLLDTLMIISDLARMDKGFYEYIKGASILEFLKDFLSHEDPNVRAKACSALGNMCRHSALFYSSLARYQIISILIERCSDPDKRTRKFACFAIGNAAYYNDVLYEELRRSIPHLAKLLQVAEEDKTKANAAGALSNLVRNSDRLCGDIVSKGAVQSLLELISDYAVSALNPSRNDSTGESPLKIALFSLAKMCAHPLCRQFMRSSPLFPVIGRLQQSPESSIAKYASVIISKVEP* 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2498 1333 SMART serkin_6 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2498 1333 Gene3D - 1029 1331 IPR011989 -
Tpr1g2498 1333 Pfam HEAT repeats 1128 1232 - -
Tpr1g2498 1333 Gene3D Transferase(Phosphotransferase) domain 1 2 327 - -
Tpr1g2498 1333 SMART arm_5 1114 1154 IPR000225 GO:0005515
Tpr1g2498 1333 SMART arm_5 1198 1237 IPR000225 GO:0005515
Tpr1g2498 1333 SUPERFAMILY Protein kinase-like (PK-like) 4 288 IPR011009 -
Tpr1g2498 1333 CDD STKc_STK36 5 257 - -
Tpr1g2498 1333 ProSiteProfiles Protein kinase domain profile. 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2498 1333 SUPERFAMILY ARM repeat 1027 1331 IPR016024 -
Tpr1g2498 1333 ProSitePatterns Protein kinases ATP-binding region signature. 13 40 IPR017441 GO:0005524
Tpr1g2498 1333 Pfam Protein kinase domain 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2498 1333 Coils Coil 41 61 - -
Tpr1g2498 1333 PANTHER PROTEIN KINASE RELATED 1 1332 IPR045193 GO:0004674
Tpr1g2498 1333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2498 Tpr-Chr1 28252524 28265293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2498 4 274 AGC Kinase Gene Family AT3G08730 37.324 1.40e-46 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Tpr1g2498 Pkinase 1.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2498 K06228 - gmx:100792102 2145.93