Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2496 ATGTTGGCCATTTCTCCACCTTTGTTCTCAACAATTGGATGGCCCTTTGAAGAGCACATAAGCCATAATCTGCATCAGAATCACTTCTACAAAGACATTACTACTACTGATCAATTATTTCATATTAAAAACCAACTTGAAGCTGAAAATTCAACTGATCCATCACAAGCCACAAGCTGTGACCTTAGTCTGGTCAAGAAGCTTGTCCATAATGCTAGTGAGCGCGATCGCCGCAAGAAGATCAATAATTTGTATTCTTCACTACGTTCACTTCTTCCTTATTCAGATCAATTGAAGAAGTTGAGCATTCCAGCAACAATTTCGCGAGTTCTAAAATACATACCGGAGTTACAAAAACAGGTGGAAGGACTAATTAAGAGAAAAGAAGAGATCTTATTGAGATTTTCTCCTCAAGTTGACGAGGTTATAATAAGCAAAGAATCTCAAATGAAGAAGCAAAGTTACAATTCTGGTTTTGTAGTTTCAACAAGTAGACTTAATGATAGTGAAATTACTATTCAGATTTCATGTTACACTGTCAACAAGATTCCATTATCTGAGATCTTGCTCTGTTTAGAAAATGATGGCCTTTTTCTGCTAAATGTTTCTTCTTCTCAGACATTTGGAGGGAGGGACTTCTATAATTTGCATTTACAGGTGGATAAATCTCAGAGATTAGAAACCGATATTCTAAATGAGAAGCTCTTATCAATAATGGAGAAAAAGTGA 729 0.358 MLAISPPLFSTIGWPFEEHISHNLHQNHFYKDITTTDQLFHIKNQLEAENSTDPSQATSCDLSLVKKLVHNASERDRRKKINNLYSSLRSLLPYSDQLKKLSIPATISRVLKYIPELQKQVEGLIKRKEEILLRFSPQVDEVIISKESQMKKQSYNSGFVVSTSRLNDSEITIQISCYTVNKIPLSEILLCLENDGLFLLNVSSSQTFGGRDFYNLHLQVDKSQRLETDILNEKLLSIMEKK* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2496 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 117 IPR011598 GO:0046983
Tpr1g2496 242 Gene3D - 63 142 IPR036638 GO:0046983
Tpr1g2496 242 CDD bHLH_AtORG2_like 66 141 - -
Tpr1g2496 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 134 IPR036638 GO:0046983
Tpr1g2496 242 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 240 IPR015660 GO:0003700|GO:0006357
Tpr1g2496 242 SMART finulus 71 123 IPR011598 GO:0046983
Tpr1g2496 242 Pfam Helix-loop-helix DNA-binding domain 66 118 IPR011598 GO:0046983
Tpr1g2496 242 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2496 Tpr-Chr1 28227725 28229845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2496 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.600 9.99e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g2496 HLH 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2496 - - mtr:MTR_1g048750 328.561