Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2495 ATGTTGGCCATATCCCCTGCTTTGTTCTCAACAATTGGATGGCCCTTTGAGGAGACCATAAGCCATAATCACCATCTGAATCACTTCTACAAAGACAGTAGTACTACTACTGATCAATTATTTGACATTAATTATCAAGTTGAGGCTGAAAATTCAACTGATCCGTCACAAGCAACAAGCTGTGACCTTAGTATGGTCAAGAAGCTTGTCCACAATGCTAGTGAGCGCGATCGCCGCAAGAAGATCAATAATTTGTATTCTTCAATTCGTTCTCTTCTTCCAGTTTCAGATCAAATGAAGAAGTTGAGCATTCCAGCAACAATTACGCGAGTTCTAAAATACATACCGGAGTTACAAAAACAGGTGGAAGGACTAATTAAGAGAAAGGAAGAGATCTTAATGAGATTTTCTCCTCAAGTAGATGAGGTTATGATTAGCAAAGAATCTCAAAGGAAGAAGCAAAGTTACAATTCTGGTTTTGTAGTTTCAACAAGTAGACTTAATGATAGTGAAATTACTATTCAGATTTCATGTTACACTGTCAACAAGATTCCATTATCTGAGATCTTGCTCTGTTTAGAAAATGATGGCTATTTCCTGCTGAATGTTTCTTCTTCTCAGACATTTGGAGGGAGGGACTTCTATAATTTGCATTTACAGATGGATAAATCTCAGAGATTAGAATCCAATATTCTAAATGAGAAGCTCTTATCATTAATGGAGCAAAAGTGA 732 0.3661 MLAISPALFSTIGWPFEETISHNHHLNHFYKDSSTTTDQLFDINYQVEAENSTDPSQATSCDLSMVKKLVHNASERDRRKKINNLYSSIRSLLPVSDQMKKLSIPATITRVLKYIPELQKQVEGLIKRKEEILMRFSPQVDEVMISKESQRKKQSYNSGFVVSTSRLNDSEITIQISCYTVNKIPLSEILLCLENDGYFLLNVSSSQTFGGRDFYNLHLQMDKSQRLESNILNEKLLSLMEQK* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2495 243 Pfam Helix-loop-helix DNA-binding domain 67 119 IPR011598 GO:0046983
Tpr1g2495 243 Gene3D - 62 155 IPR036638 GO:0046983
Tpr1g2495 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 118 IPR011598 GO:0046983
Tpr1g2495 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 136 IPR036638 GO:0046983
Tpr1g2495 243 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 241 - -
Tpr1g2495 243 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 241 IPR015660 GO:0003700|GO:0006357
Tpr1g2495 243 CDD bHLH_AtORG2_like 67 142 - -
Tpr1g2495 243 SMART finulus 72 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2495 Tpr-Chr1 28215711 28217949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2495 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.063 5.91e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g2495 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2495 - - mtr:MTR_1g048750 336.265