Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2488 ATGGGGTCAAAATATTGTGGCAGAAAGCGTGAAGAAAGGTCACATACTTTACCACACATTCCTTGTCAGGACCTTTCATCTTCTTCTGACAAACGCAAAAGGGTGCAAGAAGCATTGAAAACTTTTAGGGACGAATTTGATAAACGCTATTGTCAATACAAGTCAAATCAACTAGATTACTGCTTGAAAACAAAAGTTTTAAAAGAAACTGCAGTGTCTATGCAAAAGCAATATCAATGTGAAAACACTAAAAAGAGATTAGGGCATGTTGATGGAATTAATGTTGGTGACTTGTTTCAATACAGGGCTGAACTTGTTGTCATTGGTCTTCATCACGAATTCGAAAAAGGAATTGATTATTTGGGTAAAAGTGAGAGTTCTTTGGCTACCAGCATTGTTGCAACTCATAAGTATTCTAATGTTATGAAAGACGGTTGTTTGATTTATGAAGGTCAAGGGACTAACCCTAGAGTACGGAAACCTCTAGCGCATCATGATCAGAAATTGGAAACCGGAAATCTTGCTTTGTGGAATAGTATGAATGCTAAGAGACCTGTTAGGGTTATACTGAAGATTTCCGGAAAATTAAAATATGATGGGTTGTATTCGGTTGACAAAATGACTCAAGAAAGGGGAGAATTTGGAAAACTTGTGTTCAAGTTTGTACTTAACAAACTTCCGGACCAACTCGCCTCTGTTTCCCTTTCCCCTAAAGATGATATGGAAACAGAAACCTTCCAGAAGAGACCCAAGTCTAGAGATCATGCTGTCCCTAAGGATATTGTTAAAATTAATGATGTTTCGGAGGGGAAAGAAAAGTTTCCTATTCGGGTGAAGACACCGACAAGTGGTGTGGAGCTATTTAAACCTTTTAATTACCTAGTCACGATGACATCTTGCATCAACCGAGTGAGTCAATGTGGTATTCAATTCGAACTGGAAATCTTCAAAACGGAATCAAAGGGGTGGGGTGTTCGAACGCCGTCTTTCATTCCATCTGGAAGCTTTGTGTGCGAGCTCGTTGGAGAATTTGCTCATCACAACAACAAAAATGCAGAATCAATTCTACATGATGCTAACTTTATATTTAATTTAGGTTTTGGGAAGGGCTTCATTGATGCAACTAAACATGGAAACATTGGAAGATTTATAAATCATAGTTGTTCTCCTAACCTATGTGTGAAAGATGTTATGTATGATCACAATGATAAGAGTGTACCCCACAAAATGTTGTTTGCTGAGCAGGACATACCCGCAGATAGAGAGCTAAGTTATAATTACAATTGCTTCAAGAGAAATTTCAAGGTTGAGAGTAATGATTGCTACTGTCGTTCACCAAAATGCCATGGACAAATTTACATTTGA 1365 0.3788 MGSKYCGRKREERSHTLPHIPCQDLSSSSDKRKRVQEALKTFRDEFDKRYCQYKSNQLDYCLKTKVLKETAVSMQKQYQCENTKKRLGHVDGINVGDLFQYRAELVVIGLHHEFEKGIDYLGKSESSLATSIVATHKYSNVMKDGCLIYEGQGTNPRVRKPLAHHDQKLETGNLALWNSMNAKRPVRVILKISGKLKYDGLYSVDKMTQERGEFGKLVFKFVLNKLPDQLASVSLSPKDDMETETFQKRPKSRDHAVPKDIVKINDVSEGKEKFPIRVKTPTSGVELFKPFNYLVTMTSCINRVSQCGIQFELEIFKTESKGWGVRTPSFIPSGSFVCELVGEFAHHNNKNAESILHDANFIFNLGFGKGFIDATKHGNIGRFINHSCSPNLCVKDVMYDHNDKSVPHKMLFAEQDIPADRELSYNYNCFKRNFKVESNDCYCRSPKCHGQIYI* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2488 454 Pfam SET domain 322 428 IPR001214 GO:0005515
Tpr1g2488 454 SUPERFAMILY PUA domain-like 71 234 IPR015947 -
Tpr1g2488 454 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 24 298 - -
Tpr1g2488 454 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 298 450 - -
Tpr1g2488 454 ProSiteProfiles YDG domain profile. 88 225 IPR003105 -
Tpr1g2488 454 SMART G9a_1 83 229 IPR003105 -
Tpr1g2488 454 SMART set_7 311 434 IPR001214 GO:0005515
Tpr1g2488 454 SUPERFAMILY SET domain 254 443 IPR046341 -
Tpr1g2488 454 ProSiteProfiles SET domain profile. 311 428 IPR001214 GO:0005515
Tpr1g2488 454 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 298 450 - -
Tpr1g2488 454 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 24 298 - -
Tpr1g2488 454 Gene3D - 69 248 IPR036987 -
Tpr1g2488 454 Pfam SAD/SRA domain 87 229 IPR003105 -
Tpr1g2488 454 Gene3D SET domain 249 453 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2488 Tpr-Chr1 28146469 28148599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2488 82 450 Su(var)3-9 homologs AT1G73100 31.277 1.03e-50 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr1g2488 SAD_SRA 1.3e-35 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2488 - - lja:Lj6g3v0156100.1 391.734