Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2479 ATGTCTATGTTGGATCTTAATGTTGACATAATCCATGTTGATGATTACTCAACTAATGTTCAAAAGGGGTTGCAACTTCAAACTTTTCCACATGAAATATCAGATTCTAGAACCTCCAACTCTTCTGTTTCGAATCCAACAGACGAATATTCCTCAAACAATTCAGTTCCTTTCAACTTTGACCTGTTGAAGAAAGAAAATGATGTCTCGGAAACAATCACAAGGACCCTTTTCCCTGTGAGTGCTGATGGAGGAGGTAGATTATGTGATTCCAATTCCATTAATCAAAGGTTGAACTTTGATGATCAAAATGGACACAGAACCTTGCAGCAAAAGCAACCTAGGAAAAGTAGGAGAGGACCAAGGTCTCGAAGCTCACAGTTCCGGGGTGTTACCTTCTACCGTAGGACGGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCAAGAGCATATGATAGGGCTGCTGTTATGTTTAGGGGAGTTGATGCTGATATAAACTTCATTTTAAGTGATTATGAAGAGGATTTGAAGCAGATGAGAGGTTTGAGCAAGGAAGAATTTATTCAAAGACTTCGTAGACAAACCAATGGAAACTCAAGAAGAAGTTCAACATACAGAAGTATATTACCTCTTCACAAATATGGTCAAGAAGATCCACCATATGTGGCAAAAACATTTTGTCACAAGTCACACATGAAGGAAACCAGTTTTAAGGCCTCTACTACTTATAAGGGAGAAATAATTGCAAATTCCAACAAATTACATCATCTTGATTTGAGTCTAAGGATTTCACCATCTTCCAAACAATTGGATAACAATAATTCTGGAGTTGGATTTTCTTCTGCATGTACCACCTATATGATACCTCAAGAAAGGGGAACAATGGAGATGGCTTTGTTAAACATTAAAAAGGAAGTTCCTTGCAACAAGTATTGGCCTGGCAATTTTGCAGCAATGGGAGAAGAATTGCATTAG 1020 0.3873 MSMLDLNVDIIHVDDYSTNVQKGLQLQTFPHEISDSRTSNSSVSNPTDEYSSNNSVPFNFDLLKKENDVSETITRTLFPVSADGGGRLCDSNSINQRLNFDDQNGHRTLQQKQPRKSRRGPRSRSSQFRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVMFRGVDADINFILSDYEEDLKQMRGLSKEEFIQRLRRQTNGNSRRSSTYRSILPLHKYGQEDPPYVAKTFCHKSHMKETSFKASTTYKGEIIANSNKLHHLDLSLRISPSSKQLDNNNSGVGFSSACTTYMIPQERGTMEMALLNIKKEVPCNKYWPGNFAAMGEELH* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2479 339 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 297 - -
Tpr1g2479 339 MobiDBLite consensus disorder prediction 100 128 - -
Tpr1g2479 339 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 297 - -
Tpr1g2479 339 MobiDBLite consensus disorder prediction 31 51 - -
Tpr1g2479 339 Gene3D AP2/ERF domain 126 184 IPR036955 GO:0003700|GO:0006355
Tpr1g2479 339 SUPERFAMILY DNA-binding domain 126 183 IPR016177 GO:0003677
Tpr1g2479 339 ProSiteProfiles AP2/ERF domain profile. 127 183 IPR001471 GO:0003700|GO:0006355
Tpr1g2479 339 Pfam AP2 domain 127 174 IPR001471 GO:0003700|GO:0006355
Tpr1g2479 339 SMART rav1_2 127 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2479 Tpr-Chr1 27996729 28000272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2479 3 230 AP2-EREBP Transcription Factor Family AT5G60120 47.212 1.72e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g2479 AP2 4.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2479 K09284 - gmx:100783626 332.028