Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2474 ATGGGAAGAAGACCTGCAAGGTGTTACCGTCAAATTAAAAACAAGCCATACCCTAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTACGATGTCGGTATGAAAAAGAAGGGTGTTGATGAGTTTCCTTTCTGTGTTCATCTTGTCAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCACTTGAAGCTGCTAGGATTGCTTGCAACAAGTACATGGCTAAATTCGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTTCATCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACCGGTATGAGAGGTGCTTTTGGAAAGCCACAAGGTATTTGTGCTAGAGTGGCTATTGGACAGGTCCTTCTTTCAGTCCGCTGCAAGGACAGCAACAGCCACCACACACAGGAGGCCCTCCGTCGTGCTAAGTTTAAGTTCCCTGGCCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACCAAGATTGACCGAAATGATTATCTGAAATTAAAGTCAGTGAACAGAATTTTGGCTGATGGTGGTGTGAATGCTAAGCTCCTCGGATGTCATGGACCATTGTCTAACCGTCAACCTGGAAGAGCATTCATTAATGCCAGCTGTAATGAGGAAGCTTAG 678 0.4513 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGICARVAIGQVLLSVRCKDSNSHHTQEALRRAKFKFPGRQKIIVSRKWGFTKIDRNDYLKLKSVNRILADGGVNAKLLGCHGPLSNRQPGRAFINASCNEEA* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2474 225 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr1g2474 225 Gene3D Ribosomal protein L10e/L16 1 219 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tpr1g2474 225 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tpr1g2474 225 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tpr1g2474 225 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Tpr1g2474 225 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 220 - -
Tpr1g2474 225 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tpr1g2474 225 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr1g2474 225 PANTHER 60S RIBOSOMAL PROTEIN L10 1 220 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2474 Tpr-Chr1 27901835 27902729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2474 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.000 9.25e-140 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2474 K02866 - rcu:8283224 425.246