Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2470 ATGAATATTCTAGTTTCTGTTGCTGAAAAAGTTGCAGATTATATCTTTGAGCCCATTGTACGTCAAGCAGGTTATTTGATATTCTACAAAGGCAATTTTGAGAATTTAGCGGCTCATGTTGTATACCTTGAGGCAGAACGAGTGAGAATCAATCATTCGATTGAAGAAGAAAGCGGAAATGGCAAAAAAATCGAAAGAGATGTGGAGATCTGGCTAGAGAAAGTGAACGATCTCATTGAAAGGGCAAATCAGCTCCACAAAGATCCTCGTCGTGCCAATGCTAGGTGCTCACCATGGCGGTTCCCCAATTTGATTTTACGACATCAACTAAGTAGGAAAGCCACAAAAATTGTAAACGATGTCATTCATGTTCAAGGAAAAGGCAAATTTGATCGAGTTGGTCACCTTCCGATCCTAGATGGAGTAGCCTCCTCCTCTACAAGAGGTGATGAAATTTATGAGACAAGAGAGTCACTTAAGGGTGATATTTTGAAGGCCCTAGCAGACCTTAATTCATGCAATATTGGAGTCTATGGGTTGGGTGGGGTGGGTAAGACCACTTTGGTAGAGGAAGTTGCTCAAATATCCAAGCAACGCAAATTGTTCGATAAAGTGGTTATAACACATGTATCCAAAAATCCAGACTTTAAAACCATTCAAGGGGAGATTGCAGATTTGTTGGGTTTGCAATTCAAGGAGGAGACAATTTTTGGAAGAGCAAATCGTCTAAGACAAAGAATCAAGATGGAGAAAAGCATCCTTCTCATTCTGGACAATATATGTACAAAGTTTGATTTGAAGAAAGTGGGAATCCCATTTGGTAAGGAACATAATGGTTGCAAATTATTGATGACATCTATAAATCATGATGTGTTGTTGCAAATGGATGTTCCAGAGGATTTCATTTTTAAACTTGAACTTATGAGAGAAAATGAGACATGGAGATTGTTTCAAATCATGGCTGGGGATGTGGTTAAAAAAACAAATTTAAAAGATGTAGCATTTAAAGTTTCTCAAAAATGCGAAGGTTTGCCGCTTAGGGTAGTGATGGTAGCAAGTGCAATGAAAGATAAAAGGGATGTCCAATCTTGGGAATATGCATTACGGAAATTAGAAAGTAATGATGGTATAGGGATGGACCCAAAGACTTATTCTGCTTTGGAATTAAGTTACAACTTATTGGAAAGTGATGAAATGAGGGATGTATTCTTACTTTTTTCATTACTCCTGGGTAATGATGTAGAGTACTTTCTGAAAGTTGCAATGGGTCTGAAAATAATAAAGCTTAATAGTACCATGGAGGATGCAAGAGCCAGACTTTACACAATAATCAAATCTTTGGAGGCATGTCTATTGCTATTTAAAACAAATGGAAAGATCCAGATGCAAGATTACATTCGTGATTTTGCTACCTCCGTAGCATGTAGGGACAAACATGTATTTCTAAGTAAACAACCAAATGAGGATTGGCCAACGGATGATTTTTTAAAAAGGTGCACGCAGATCGTCATAAATTACTTTCCTATCCACAAGCTTCCTGAAACGTTTAATTGTCCAAACATCAAGTTTTTCTGTTTAGGAAGTGTGAACCGTTCTTTAGAAATCCCAGATAATTTTTTTGAGGGTATGGGAAGCCTTACAACGCTAGATTTAGGTTGCTTGAACTTGTCTTCATTACCCACCTCTGTTCGGTTCCTAACTAACCTTAAAATGATGTGTTTGTATTCATGTGTTTTGGAAAATATGGATGCAATAGAAGCTTTGCAAAATTTAGAAATTCTTCATTTATGGCAATGTTCAATGATCAAGTTGCCAAGAGAAATAGGGAAATTGCATGAATTGAGGATGCTTGATTTGACCAATTCTGGAATAGAAGTATTCCCACCCAACATCTTATCTAGTTTGACTAAATTGGAAGAGTTGTATATGGGTGATACCTCTATTAATTGGGGAGATGTGAATTCAACGGTTAACAATGGAAATGCTAGCATTGTTGAACTTCAGAAACTACCCAACTTGACAGCCCTTGAATTACAAATTCGTGAGACTTCGATGTTGCCAAGAGACTTGCAATTGATGTTTGAGAAGTTGAAGTATTTTAAAATAGCTATTGGGGATGTATGGGACTGGGCTGACATTAAGGATGGAACCTTGAAAACATTGATGCTCAAACTTGGTACTAATAACATACATTTAGAGCACGGAATTAAAGCATTGATCAAAAGAGTTGAGAATTTGTACTTGGATGATGTTGATGGAATTCAAAATGTGCTTTATAACCTAAGTGCAGACGGATTTCCTTTGCTGAAACATCTCCACGTCCAAAATAATGGAAACATGAAGCACATTGTTAACTCTAAAGAGAGAAATCAAATTCATGTATCATTTCCCATCTTAGAAACACTAGTTCTCCAAAACCTTAAAAACTTGGAGCATATATGTCATGGTCCACTTTCAATTACTTCTTTTGGAAGTCTTAGTGTTATCAAAGTCAACAATTGTGTCCAGTTGAAGTATCTTTTCTCCTTTACAATGGCTAAAGGACTTTCCCAACTTTCCAAGATTGAAGTTTTTCGATGCAATTCTATGAAGGAGATAGTGCTCGGAGACAACAATTCAAGTGCAAATAATGATATAACTAACGAAAAAGTTGAGTTCCTTCAATTGCGTTCTTTGACTTTAGAATATTTGGAGACACTTGATAATTTTTTCTCTCATTATTTGGCACATTCCAAGAGCAAGCAAAATCATCAAGGCTTGGAGCCTTATGTTTCTACACCATTTTTCAATGCCCAGGTTGCTTTTCCTAATTTGCATACTCTTAAATTGAGCTCACTCCTCAATTTGAACAAAATTTGGGATGACACTCATCATTCAATGTTCAACTTGACTAGTTTAACCGTGGATAATTGTGGTGGGTTGATGTACTTATTCCCCTCTACCGTGGTTGCAAGTTTTAAAAACCTCGAACACCTTGAAATAACTAATTGTCCTATGATGGAGGAGATTATAGCTAAAGATGAGGGAAACAGAGTATCAAATGAGGTTCATTTTTCCAAATTAGAGAAAATCATATTGAAGGACATGGACAACTTGAAGACAATATGGCACCACCAATTTGAAGCATTGAAGATGTTGCAAGTGAACAATTGTAACAAAATTGTGGTGGTTTTTCCTTCTTCAATGCAAAAAACATATAATAAGTTAGAGATGTTAGAGGTTACAAATTGTGCATTAGTTGAAGCAATATTTGAATTGAATTTCAACGAAAGCAACAATGTAGAAGATGCAACACATTTGAAAGAAGTTACTATAGATGGATTGGACAAGCTGAAAAAGATATGGAGTGGTGATCCTCAAGGAATTCTTAGTTTTCAAAATCTAAGAAATGTAAAACTAAATGATTGTGCAAGCTTGGAGTATCTATTACCACTTTCCGTAGCCACTGGTTGCTTACATCTCCAGGAACTTCATATAATAGACTGTGGAAATATGACGGAAATTGTTGCAGCGGATAAAGTATCTAGCGTGATAGAAGCTCCCATAATTGAGTTTAATCAATTAAGTACATTATTGCTTTGGCAATTAAGTAAACTCAGGGGTTTCTATGCTGGAAATCATACCCTAGCATGCCCATCTTTGAAGATAATTGATGTTTTTGATTGTGCAAAGTTGAATTTGTACAGACCTCTATCTACAAGAAGCTTCAACATTCGAGATGACAAACTCTCTATTTCAATGCAACAACCACCTTTCATTGTCGAAGAGGTGATTCCAAATTTAGAGCAGTTGAGAATAAATCATAAGGAAACTAATATGATATTGCAAGCTCAAAATTCAAGTGTCCTATTCACAAAAATCACAAGTCTTGCTTTTGTTGGTAGTAAGAATAAGAATGAAGATACATTTCCTTATTGGTTTCTTCAAAATATGCGCAGTCTTGAGTCACTAGTTGTTGAACGTAGTTGCTTTAAGAAGATATTCCAAGATGAAGGAAGCATGAGTGAGGAGACTCACACAAAAATCAAAATCTTGACATTGAGTGACTTACCTAACCTTGAACATATATGTGAGGAAGGATTTCAAATTGACCCAGTTCTTGAGTTTCTTGAATACTTAGAGTTTAGTAATTGTTCTAGTCTGATAAATTTGCTGCCTTCCTCGGTCACCTTTGCTCATTTGGAATATTTAGTGATAAAAGATTGCAAAGGGCTAACAAAACTAATTACATCTTCTACCGCGCAAAGTTTGAACAAGCTCATAGCACTAGAGATAGAAGACTGTACTTCACTTGAAGAAATCATTATTGGAGAGGAAAACTTTCACATTACATTTATCAGCTTACAAGTATTGATGTTGGAATGTTTGCCTAGCCTCAACCAATTTTGCTCTAGTAAATTCTTCCTCAAATTTCCGTTGCTGGAATTTGTAATTGTGAGAGAATGTCCTCGCATGAAGGTTTTTTCTGAAGGATACTTAAGTACACCGAATCTTCGGAAAGTTAAAATTGCAGAAAATGATGAGCAATGGTTTTGGAAGGGAAACCTAAATGATACAATAAACAAGATGTTTGAAGATAAGGTTGCATTTGGTAAATTCAAATATTTGGCCTTATCCGACTACCCTGAGATGAAGGATTTGTGGTATGGTCAAGTTGATCAAAATCTATTTTGCAATTTGAAACATCTAGTGGTGAACAAATGTGATTTTTTATCAGATGTACTTTTTCCATCAAATGTAATGCAAGTGCTATATGGATTGGAAGAACTTGAAGTAACAGATTGTGATTCATTAGAAGCAGTGTTTGATGTGAAGGGTATGAAGTCTAAAGACACATTGATAAAACAAAGCACTCAATTGAAAACATTGACTTTGTCCAACCTACCAAAATTGAAGCACATATGGAATGACAATCCTCATGAAATTATTTCCTTTGGAAATTTATGCACGGTGAATGTTTCTATGTGCCAAATTTTGTTCTATATTATTTTTTCATCATCACAATGTCAAGATCTTGAACATCTTGAAATGCTTGATATTGAGTCTTGTGGAGTTGAGCAAATTGTAGGAATGGATGAGGAAATATCAATGGAAATCAATTTTAATTTTCCTCAATTGAATAAATTGAGACTGATTAATTTGACAAAGCTTACGAGCTTCTACTGTGGAAAGTATTCTTTAGAGTGTCCTTCATTAAAGGTTTTGAATGTATATCGTTGTGAAGCATTAAGAATGTTTTCATTCATCCATAAACAACCTAACTTGATGGACATAAGTCATGATATTCTATCTCAACAAGCTCTGTTTTCTATTGATGAAAAGTTGAGCCCCAACCTAGAGGAATTGGCAATAAATGGCACAGATTTGTTGGGGATATTGAATGGTTATTGTCAAGAAAATATGTTTCATAAAGTTGAATTTCTTCGCTTACAAAGCTTCGATGAAAGTCCAACTAGTTTTATGAATGAACTCCATAAAATATTTCCTAATCACAAAACACTTCAAGTGCGTAATAGTTCTTTTGAAATACTGTTCCCCATTAAAAGAACCACTGGTCATCTGAGTATGAAAAATTTAAAGCAAGTAAGACATTTGTGGGTTTATGAATTGGAAAAGCTCGAGCACATATGGGAGAAAGAGTTTCTACTAGATCATCCTCTCCTACAAGATCTTGAAGACTTAACTGTATCGACTTGTCCAAGTTTAATAAGCTTGGTACCATCGTCCGCATCTTTCACAAACTTAACCTCTTTGGAAGTGGACAATTGCAAAGAGCTTCTTTATTTAACACCATCCTCAACTGCTAGAAGTCTTGTACAACTCAAAGGATTAGCAATATCAAATTGTGAGAAGATGATAGAAATTGTGAAGATTGATGAGGAAAATGCAGACAAAGACATCATATTTGAAAACTTGGAAATCATGAAATTCACTTCTTTGTCAAGTTTGACAAGCTTCTGCTATGAGAAACACACAATCATATTCCCATCTTTGCTATCTCTCACTGTTCAAGAATGCCCTCAAATGGAGATCTTCTCATCAGGAGTCACAGTAGCACCGTATCTGACAGAAATTGAAGTGGAAGAAGAAACTATTCGATGGAAAGATGACATTAACACAACTATTCAACAATTATTCCTAGAAAAGGAAGTCCTACGTTCTAATGTGCTGAATGAGACCATCGTATCTTCACATTTGCAAGATGAGAAGCTAGTTGATCAAGATGATATTGAGGTAGACCCTGAGGAGGGACCGACATGCCATAGTAGAAAAGATATAGTTTCCCTTAATTATTTTATGTTGTCATTGTTTTTCCTGTTTGTTTATGTTATTTTGATTTTTAGGATCGACACAAAGATTATGAGACTTTGGTGTTAG 6378 0.3554 MNILVSVAEKVADYIFEPIVRQAGYLIFYKGNFENLAAHVVYLEAERVRINHSIEEESGNGKKIERDVEIWLEKVNDLIERANQLHKDPRRANARCSPWRFPNLILRHQLSRKATKIVNDVIHVQGKGKFDRVGHLPILDGVASSSTRGDEIYETRESLKGDILKALADLNSCNIGVYGLGGVGKTTLVEEVAQISKQRKLFDKVVITHVSKNPDFKTIQGEIADLLGLQFKEETIFGRANRLRQRIKMEKSILLILDNICTKFDLKKVGIPFGKEHNGCKLLMTSINHDVLLQMDVPEDFIFKLELMRENETWRLFQIMAGDVVKKTNLKDVAFKVSQKCEGLPLRVVMVASAMKDKRDVQSWEYALRKLESNDGIGMDPKTYSALELSYNLLESDEMRDVFLLFSLLLGNDVEYFLKVAMGLKIIKLNSTMEDARARLYTIIKSLEACLLLFKTNGKIQMQDYIRDFATSVACRDKHVFLSKQPNEDWPTDDFLKRCTQIVINYFPIHKLPETFNCPNIKFFCLGSVNRSLEIPDNFFEGMGSLTTLDLGCLNLSSLPTSVRFLTNLKMMCLYSCVLENMDAIEALQNLEILHLWQCSMIKLPREIGKLHELRMLDLTNSGIEVFPPNILSSLTKLEELYMGDTSINWGDVNSTVNNGNASIVELQKLPNLTALELQIRETSMLPRDLQLMFEKLKYFKIAIGDVWDWADIKDGTLKTLMLKLGTNNIHLEHGIKALIKRVENLYLDDVDGIQNVLYNLSADGFPLLKHLHVQNNGNMKHIVNSKERNQIHVSFPILETLVLQNLKNLEHICHGPLSITSFGSLSVIKVNNCVQLKYLFSFTMAKGLSQLSKIEVFRCNSMKEIVLGDNNSSANNDITNEKVEFLQLRSLTLEYLETLDNFFSHYLAHSKSKQNHQGLEPYVSTPFFNAQVAFPNLHTLKLSSLLNLNKIWDDTHHSMFNLTSLTVDNCGGLMYLFPSTVVASFKNLEHLEITNCPMMEEIIAKDEGNRVSNEVHFSKLEKIILKDMDNLKTIWHHQFEALKMLQVNNCNKIVVVFPSSMQKTYNKLEMLEVTNCALVEAIFELNFNESNNVEDATHLKEVTIDGLDKLKKIWSGDPQGILSFQNLRNVKLNDCASLEYLLPLSVATGCLHLQELHIIDCGNMTEIVAADKVSSVIEAPIIEFNQLSTLLLWQLSKLRGFYAGNHTLACPSLKIIDVFDCAKLNLYRPLSTRSFNIRDDKLSISMQQPPFIVEEVIPNLEQLRINHKETNMILQAQNSSVLFTKITSLAFVGSKNKNEDTFPYWFLQNMRSLESLVVERSCFKKIFQDEGSMSEETHTKIKILTLSDLPNLEHICEEGFQIDPVLEFLEYLEFSNCSSLINLLPSSVTFAHLEYLVIKDCKGLTKLITSSTAQSLNKLIALEIEDCTSLEEIIIGEENFHITFISLQVLMLECLPSLNQFCSSKFFLKFPLLEFVIVRECPRMKVFSEGYLSTPNLRKVKIAENDEQWFWKGNLNDTINKMFEDKVAFGKFKYLALSDYPEMKDLWYGQVDQNLFCNLKHLVVNKCDFLSDVLFPSNVMQVLYGLEELEVTDCDSLEAVFDVKGMKSKDTLIKQSTQLKTLTLSNLPKLKHIWNDNPHEIISFGNLCTVNVSMCQILFYIIFSSSQCQDLEHLEMLDIESCGVEQIVGMDEEISMEINFNFPQLNKLRLINLTKLTSFYCGKYSLECPSLKVLNVYRCEALRMFSFIHKQPNLMDISHDILSQQALFSIDEKLSPNLEELAINGTDLLGILNGYCQENMFHKVEFLRLQSFDESPTSFMNELHKIFPNHKTLQVRNSSFEILFPIKRTTGHLSMKNLKQVRHLWVYELEKLEHIWEKEFLLDHPLLQDLEDLTVSTCPSLISLVPSSASFTNLTSLEVDNCKELLYLTPSSTARSLVQLKGLAISNCEKMIEIVKIDEENADKDIIFENLEIMKFTSLSSLTSFCYEKHTIIFPSLLSLTVQECPQMEIFSSGVTVAPYLTEIEVEEETIRWKDDINTTIQQLFLEKEVLRSNVLNETIVSSHLQDEKLVDQDDIEVDPEEGPTCHSRKDIVSLNYFMLSLFFLFVYVILIFRIDTKIMRLWC* 2126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2470 2125 Gene3D Ribonuclease Inhibitor 922 1290 IPR032675 -
Tpr1g2470 2125 Gene3D Ribonuclease Inhibitor 1753 1936 IPR032675 -
Tpr1g2470 2125 Gene3D Ribonuclease Inhibitor 494 601 IPR032675 -
Tpr1g2470 2125 Gene3D Ribonuclease Inhibitor 1295 1511 IPR032675 -
Tpr1g2470 2125 Gene3D Ribonuclease Inhibitor 602 867 IPR032675 -
Tpr1g2470 2125 Gene3D - 143 302 IPR027417 -
Tpr1g2470 2125 PRINTS Disease resistance protein signature 174 189 - -
Tpr1g2470 2125 PRINTS Disease resistance protein signature 247 261 - -
Tpr1g2470 2125 PRINTS Disease resistance protein signature 341 355 - -
Tpr1g2470 2125 PRINTS Disease resistance protein signature 586 602 - -
Tpr1g2470 2125 Gene3D - 308 395 IPR042197 -
Tpr1g2470 2125 SUPERFAMILY RNI-like 1535 1756 - -
Tpr1g2470 2125 SUPERFAMILY RNI-like 1367 1600 - -
Tpr1g2470 2125 PANTHER RPP4C3 1369 1519 - -
Tpr1g2470 2125 PANTHER RPP4C3 1124 1225 - -
Tpr1g2470 2125 PANTHER RPP4C3 1643 1758 - -
Tpr1g2470 2125 PANTHER RPP4C3 1899 2041 - -
Tpr1g2470 2125 PANTHER RPP4C3 19 1103 - -
Tpr1g2470 2125 PANTHER RPP4C3 1524 1607 - -
Tpr1g2470 2125 SUPERFAMILY L domain-like 1771 2028 - -
Tpr1g2470 2125 Pfam NB-ARC domain 160 375 IPR002182 GO:0043531
Tpr1g2470 2125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 405 IPR027417 -
Tpr1g2470 2125 SUPERFAMILY L domain-like 462 999 - -
Tpr1g2470 2125 PANTHER - 1524 1607 - -
Tpr1g2470 2125 PANTHER - 1643 1758 - -
Tpr1g2470 2125 PANTHER - 19 1103 - -
Tpr1g2470 2125 PANTHER - 1369 1519 - -
Tpr1g2470 2125 PANTHER - 1899 2041 - -
Tpr1g2470 2125 PANTHER - 1124 1225 - -
Tpr1g2470 2125 Gene3D Ribonuclease Inhibitor 1512 1752 IPR032675 -
Tpr1g2470 2125 SUPERFAMILY RNI-like 936 1357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2470 Tpr-Chr1 27838238 27865084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2470 175 631 WRKY Transcription Factor Family AT5G45050 23.359 1.70e-08 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2470 - - cam:101502322 2531.9