Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2468 ATGAAGAACTCTGCTTCGGATCAATGTTTTTTCATCGATAGCGATAACGATGAAGAGAGGGAGTTAGGAAGAGAAGTAAATGATGGAAATGTATCAGACTTTTCCAATGACTCTAATGATAATTTATACCAAAGAAAGCCAAGCTCCTATAGCATGGCATGGCCTCAAAGTTACAGGCAATCCATTGATCTCTATGGTACTGTGCCATCGCCAAATATCGGATTTCTTGGAACAACTGCCACAACATCATTGACAAGATTAGGCAGTTCTTTTCTTGGTACAACATTGACACGGAGGAACACCGCTGAAATTATACCCCCTATCAAAAAGCCTCTCATACAACCGGCAGTGGACGAAGAACAGCAGCATATCTCTCAGACATTGCTTCCTCCCCTCCCATCTAGGAAGTCTTCAGTTAGGAAATCTTTAAAGATTTCACATGAAGTTCAAATTCCTGGCCAATGCTCTTTTGGACAAGCTGTGCTTAATGGTATGAATGCCCTTTGTGGCGTTGGAATCCTTTCAATCCCTTATGCTCTACATGAAGGTGGATGGGCTGCACTTGGAATCTTGCTGATATTTGCAGTATTTTCCTTTTATACTGGATTGCTGTTGCGTTATTGCTTGGATAGCGAACCTGGTCTGGAAACCTATCCCGACATTGGTCAAGCAGCTTTTGGTACTACTGGACGTGTTGTCATTTCAATAATATTATACATGGAATTATATGCTTGCTGCATTGAATACATCATTCTAGAGAGCGACAATCTATCGTCCTTATTTCCGGATGCAAGCTTAAGTTTGGGTGGATTTAAATTGAATGCACACATTCTATTTGCAATCTTGGCCACATTGGCTATTCTTCCTACCGTTTGGCTTCGGGACCTTCGCATTCTAAGTTACATATCAGGATGTGGAGTTGTTGCATCGGCTGTAGTCGTTCTGTGCCTGGTGTGGGTTTGCGTGGTAGACGATACTCCGATTAGTACAAAAGGAACAACAACACTTAAACTTTCAACATTCCCTGTTGCTATGGGTCTATGTGGTTATTGCTTCTCAGGACATGCTGTTTTCCCCAACCTATATACGGCTATGGCTAATCGGAATCAATTCCCCGCGGTACTCTTGACATGTTTTGCTATTTGCACTTCAATGTATTGTCTTGTAGCTGCTTTGGGATACTTAATGTTTGGAGAAGATACACAGTCACAATATACTCTTAACATGCCTCGAGGATTAATAGCTTACAAGATTGCGGTGTGGACTACGGTCGTTAATCCACTTACCAAGTATGCGTTGAGTCTAACACCAGTAGCAATGTCTGTGGAGGAATTGATACCGCCAAGTAATTCCAAATTTACATTATACTCCATCCTCATCAGAACAGCACTAGTGATTTCTACATTGCTTGTTGGTCTTTCAGTTCCATTTTTCGGTTTGGTGATGTCGTTAATCGGCTCTTTGCTCACAATGTTTGTTTCCCTTATTTTACCAGCTGCTTGTTTCCTAAGCATCAAGCGCAGAAGAATCACGCGCTCTCAGGTTATACTCTGTGGTACAGTGATCGTAGTAGGTTTAGTTTCATCTGGTATTGGATCATACTCAGCCATCTCGGAGATTATAGCGGAGCTGTTTCCATGA 1641 0.4186 MKNSASDQCFFIDSDNDEERELGREVNDGNVSDFSNDSNDNLYQRKPSSYSMAWPQSYRQSIDLYGTVPSPNIGFLGTTATTSLTRLGSSFLGTTLTRRNTAEIIPPIKKPLIQPAVDEEQQHISQTLLPPLPSRKSSVRKSLKISHEVQIPGQCSFGQAVLNGMNALCGVGILSIPYALHEGGWAALGILLIFAVFSFYTGLLLRYCLDSEPGLETYPDIGQAAFGTTGRVVISIILYMELYACCIEYIILESDNLSSLFPDASLSLGGFKLNAHILFAILATLAILPTVWLRDLRILSYISGCGVVASAVVVLCLVWVCVVDDTPISTKGTTTLKLSTFPVAMGLCGYCFSGHAVFPNLYTAMANRNQFPAVLLTCFAICTSMYCLVAALGYLMFGEDTQSQYTLNMPRGLIAYKIAVWTTVVNPLTKYALSLTPVAMSVEELIPPSNSKFTLYSILIRTALVISTLLVGLSVPFFGLVMSLIGSLLTMFVSLILPAACFLSIKRRRITRSQVILCGTVIVVGLVSSGIGSYSAISEIIAELFP* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2468 546 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 22 543 - -
Tpr1g2468 546 Pfam Transmembrane amino acid transporter protein 155 537 IPR013057 -
Tpr1g2468 546 PANTHER OS05G0424000 PROTEIN-RELATED 22 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2468 Tpr-Chr1 27826768 27831494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2468 1 479 Amino Acid or Auxin Permease AAAP Family AT2G39130 62.834 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2468 K15015 - gmx:100798108 744.191