Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2463 ATGAATTTTCGGAATTTGAGGAGTAACATACGAAGAAATGAAACTTTATCAGCTTGGGATTCTTCACATGGAGAGAGACCCTCTGAACGACAACCAACTTGGGTGTCTTCACAGGGAGTGGGACCCTCTGAACAATTGCTAGCTGTTTCGGGACTACCAGCTATGGTGTCTTCACAAGGAGAGGGACCCTCTGAACGAATACAAGTTCCCGTGGTTGATTATGCTGAAAATGACGATGATGTCATTGAAACTTCGTCAAGAGACTTTGCTGAGGCCGTAGCAAACTCGAGAAGAACACGTAGAAGAATTGGACATGCCTCAAATATGGAAAATCAAACCATGCCAACTTATTTTATGCACGAAAGAGAGGAGGGAGATAGCTCTTTCATACCAATTGATGCTATTTATATCAGTTTGGAAGGAGGCACCAGTGAAGTGACTGAAAATGCCACAAAGTCACTTGATACTAACAAGGAAACTCTTGAGCCTGAAAATCAAACACCTGAACCTCCAAAAGAGCCTAGCATAACATGTCCAATATGTATGCAGCCTACTGTGGAGGAAATGACAACAAAATGTGGCCATATTTTTTGCAGGAAGTGCATCACACCTGCACTACTGTCACGTCGTAAATGCCCGACGTGCGGAAAAAATGCTACTATGAGGGGATTAGTCAGGGTGTTTCTTCCATCTTCCAGAATAATTGATGAATTGAGGATTTGGGTTCAGTGCAGTCAGCAATTTAGTGACCGCAGTGCAGTCGGCTATTAG 771 0.4332 MNFRNLRSNIRRNETLSAWDSSHGERPSERQPTWVSSQGVGPSEQLLAVSGLPAMVSSQGEGPSERIQVPVVDYAENDDDVIETSSRDFAEAVANSRRTRRRIGHASNMENQTMPTYFMHEREEGDSSFIPIDAIYISLEGGTSEVTENATKSLDTNKETLEPENQTPEPPKEPSITCPICMQPTVEEMTTKCGHIFCRKCITPALLSRRKCPTCGKNATMRGLVRVFLPSSRIIDELRIWVQCSQQFSDRSAVGY* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2463 256 MobiDBLite consensus disorder prediction 17 40 - -
Tpr1g2463 256 MobiDBLite consensus disorder prediction 146 174 - -
Tpr1g2463 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 254 IPR013083 -
Tpr1g2463 256 SMART ring_2 178 215 IPR001841 -
Tpr1g2463 256 ProSitePatterns Zinc finger RING-type signature. 193 202 IPR017907 -
Tpr1g2463 256 ProSiteProfiles Zinc finger RING-type profile. 178 215 IPR001841 -
Tpr1g2463 256 PANTHER ELFLESS, ISOFORM B 56 232 - -
Tpr1g2463 256 MobiDBLite consensus disorder prediction 146 164 - -
Tpr1g2463 256 Pfam Zinc finger, C3HC4 type (RING finger) 178 215 - -
Tpr1g2463 256 SUPERFAMILY RING/U-box 177 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2463 Tpr-Chr1 27732552 27736527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2463 76 233 C3H Transcription Factor Family AT3G07200 35.220 4.61e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2463 K22651 - fve:101313661 132.88