Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2453 ATGGGGGAAAGAGTTGATGCTAATTCAGATGTGTCATTGTCTCTGAATCTAGGAAGTGGAGGAGGAGGAGGATCTTCATTCAAATCCCTCAAGGGCCATGAGGAACAAAGGGAATATCCATGTAAGTTTTGCAGCAAGAAGTTTTCAACATGTCAAGCCTTAGGAGGACACCAAAACGCCCATAGGTGTGAAAGGGCGCTTTCAAAAATGAACAAAGAAATTCAAATGGGAACTTTTGGACTTGATCCTCGCCTATGTCCATACTCAAATCCTCATTATCATCATCAACATCCCTTCACTACTGCAAGATCCACATCTTTTTACCATGGAATTGGATCGCCTCATCTTGTTGCACCTGCAGGCTATGGTAACCCATTTGGGATGATCAACAATTCTATTTGGGCTACTCAAACTCTGCTGAATAATTATAACAATAATATGGGATTTGGAAATTATGAACGTAATAATCAGTTGCAGGTTCCTTCGTCTAGTGCTCCTCGTAGTAATCATTTTCTGTTGGGAAATAACAATCACAATGTCCCAAATAACCCCCAGATTTCATCATCATTCCCTGCTCCCAAATAA 585 0.4068 MGERVDANSDVSLSLNLGSGGGGGSSFKSLKGHEEQREYPCKFCSKKFSTCQALGGHQNAHRCERALSKMNKEIQMGTFGLDPRLCPYSNPHYHHQHPFTTARSTSFYHGIGSPHLVAPAGYGNPFGMINNSIWATQTLLNNYNNNMGFGNYERNNQLQVPSSSAPRSNHFLLGNNNHNVPNNPQISSSFPAPK* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2453 194 MobiDBLite consensus disorder prediction 175 194 - -
Tpr1g2453 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Tpr1g2453 194 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 5 190 - -
Tpr1g2453 194 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
Tpr1g2453 194 Gene3D Classic Zinc Finger 25 78 - -
Tpr1g2453 194 PANTHER ZINC FINGER PROTEIN JAGGED 5 190 IPR045320 GO:0003700
Tpr1g2453 194 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2453 Tpr-Chr1 27642927 27643511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2453 29 89 C2H2 Transcription Factor Family AT5G01860 49.180 7.41e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2453 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2453 - - mtr:MTR_2g067740 202.216