Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g2453 | ATGGGGGAAAGAGTTGATGCTAATTCAGATGTGTCATTGTCTCTGAATCTAGGAAGTGGAGGAGGAGGAGGATCTTCATTCAAATCCCTCAAGGGCCATGAGGAACAAAGGGAATATCCATGTAAGTTTTGCAGCAAGAAGTTTTCAACATGTCAAGCCTTAGGAGGACACCAAAACGCCCATAGGTGTGAAAGGGCGCTTTCAAAAATGAACAAAGAAATTCAAATGGGAACTTTTGGACTTGATCCTCGCCTATGTCCATACTCAAATCCTCATTATCATCATCAACATCCCTTCACTACTGCAAGATCCACATCTTTTTACCATGGAATTGGATCGCCTCATCTTGTTGCACCTGCAGGCTATGGTAACCCATTTGGGATGATCAACAATTCTATTTGGGCTACTCAAACTCTGCTGAATAATTATAACAATAATATGGGATTTGGAAATTATGAACGTAATAATCAGTTGCAGGTTCCTTCGTCTAGTGCTCCTCGTAGTAATCATTTTCTGTTGGGAAATAACAATCACAATGTCCCAAATAACCCCCAGATTTCATCATCATTCCCTGCTCCCAAATAA | 585 | 0.4068 | MGERVDANSDVSLSLNLGSGGGGGSSFKSLKGHEEQREYPCKFCSKKFSTCQALGGHQNAHRCERALSKMNKEIQMGTFGLDPRLCPYSNPHYHHQHPFTTARSTSFYHGIGSPHLVAPAGYGNPFGMINNSIWATQTLLNNYNNNMGFGNYERNNQLQVPSSSAPRSNHFLLGNNNHNVPNNPQISSSFPAPK* | 195 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g2453 | 194 | MobiDBLite | consensus disorder prediction | 175 | 194 | - | - | |
Tpr1g2453 | 194 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 39 | 66 | IPR013087 | - | |
Tpr1g2453 | 194 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 5 | 190 | - | - | |
Tpr1g2453 | 194 | SUPERFAMILY | beta-beta-alpha zinc fingers | 36 | 66 | IPR036236 | - | |
Tpr1g2453 | 194 | Gene3D | Classic Zinc Finger | 25 | 78 | - | - | |
Tpr1g2453 | 194 | PANTHER | ZINC FINGER PROTEIN JAGGED | 5 | 190 | IPR045320 | GO:0003700 | |
Tpr1g2453 | 194 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 41 | 61 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr1g2453 | Tpr-Chr1 | 27642927 | 27643511 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g2453 | 29 | 89 | C2H2 Transcription Factor Family | AT5G01860 | 49.180 | 7.41e-12 | 60.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Tpr1g2453 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g2453 | - | - | mtr:MTR_2g067740 | 202.216 |