Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2450 ATGGAAGCAGAAATGGTTGAAGAAGATATTTTTAGGCCAATGAGTGAAGGAAGGAAGAGCAAGAGTTTTGGAGAGTTAATCCGGAATTCAGCAAATGAAGAGGAAGAGGAGCTGAAATGGGAAGGTTTATGGAGACTTCCAACATATGATAGAATGAGAAAAGCGATTTTGAAGCAAGTTCTTGATAATGGAAAAGTTAACTATGAAGAGGTTGATATTACCAAGCTTGGTGTAGAAGAAAAGAAACTTCTTCTTGAGAGTATACTTAAGACTGCTGAAGAAGACAATGAGAATTTTCTCCACAAAATGAGGGACAGAATAGATAGGGTAGGAATTGAGATTCCGAAGATTGAAGTCCGGTTTGAGAATTTATCAGTCGAAGGGGATGCATATGATGGAACCAGAGCCTTGCCAACACTAATCAATGCTACCCTTAATGTAATAGAGGGACTTTTGAGTTACATCAAGATTTTGGCATTTAAGAAAAGGGTTATAAGGATTCTCAAAGATATTAGTGGAATTGTAAAACCATCAAGAATGACTTTATTATTAGGACCTCCAGGTTCAGGAAAAACCACACTGCTTCAGGCACTTGCCGGGAAAATGGACAAGGATCTAAGGGTATCAGGAAGAGTTACTTACAATGGTAATGAATTGTCAGAATTTGTTCCTCAAAGAACATGTGCTTATATTAGTCAGAATGATCTTCACCATGGAGAAATGACAGTGAGAGAGACGCTGGACTTCTCCGGACGCTGCTTGGGTGTTGGAACAAGGTACGATATGTTGACAGAATTGTCAAGACGAGAAAAAGCAGCAGGTATCAAACCAGATCCTGAAATAGATGCTTTCATGAAAGCTACTTCAATGGAAGGTCAAGAAACAAGTCTTGTTACAGATTATATTCTCAAGATTCTTGGACTAGAAACGTGTGCCGATATTTTGGTGGGCGATGAGATGAGAAGAGGCATATCTGGTGGACAAAAGAAGCGTTTAACCACCGGTGAGATGTTAGTGGGACCTGCAAAAGCTCTCTTTATGGATGGAATTTCAACTGGTTTGGATAGTTCCACAACCTTCCAAATAGTAAGGTGTATGAGGCAGATGGTTCATATAATGGATGTCACTATGATAATCTCACTTCTGCAACCTGCACCCGAAACATATAACCTTTTCGATGACATAGTACTACTTTCAGAAGGTGAGATTGTCTATCAAGGTCCGCGTGAGAGTGTTCTAGATTTTTTTGAAAGTGTCGGCTTCAAGTGCCCAGAAAGGAAAGGAATTGCAGACTTTTTACAAGAGGTAACTTCTAGAAAGGATCAAGAACAGTACTGGTTCAGAAGGGACATACCTTATGAGTATGTTAGTGTGCCCGATTTTGTAACCAACTTCAACAATTACAGCATTGGTAAACAACTTCATGAAGAGATTCAAGTTCCATTTGATTCTAGTAAAACTCATCATGCTGCATTAGTAAAGGAAAAGTATGGAATCCCCAAATGGGAAATTTTCAAGGCATGCTTTTCAAGCGAATGGCTATTCATGAAGCGCAGCTATTTTGTATATATATTCAAGACTTTTCAGATGACTATCATGTCTTTAATTACCCTGAGCGTATTTTTTAGAACAACGATGGATCATGGTCGACTTGAGGATGGAGGAAAATTTTATGGTGCACTATTTTTCAGTCTTGTCAATGTGATGTTCAATGGAGTAGCCGAACTTGCAATGACTGTTAACAGACTTCCTGTTTTCTTTAAGCAGCGAGATTTCCTATTTTATCCCGCATGGACTTTTGCATTGCCCATTTGGGTCCTACGAGTTCCTATGTCTCTATTGGAATCAGGATTTTGGATCATCCTCACTTATTATACTATTGGTTTTGCTCCATCGCCTAGTAGGTTTTTCCGTCAACTATTGGCATACTTCTGGGTGAATCAAATGGCTCTAGCCCTTTTCCGCTTCATTGCTGCAATTGGAAGGACAAGAGTTGTGTCTAACACACTTGCTTCCATAACAATTTTAGTTGTTTTCGTCTTAAGTGGATTTACTGTTTCAAGAGATGATATTGGACCATGGATGATATGGTGCTATTATGCTTCACCTATGATGTATGGAATGACTGCAATAACCATCAATGAATTTCTAGACGAAAGATGGAGTGCTCCTAATATCGACCCTAGAATTGATGAACCTACAGTTGGGAAGGCTTTACTTAAGGCTAGAGGCATATTTACAGAAGACTATTGGTATTGGATATCTATCGGTGCTCTTATAGGATTTTCTCTACTGTTCAATGTTTGTTTCATTCTCGCTCTAACTTACTTGGACCCATTCACAAGCTCCAAATCTATCATAGTGGATACAGGTGCAGAAATGGAAGTAAGAAACAAAACACATAGCTCAATTCCTAAAGCTGCAAAGAATGCAAAATTCAAGAAGGGAATGGTGTTGCCCTTTCAGCCTCTGTCACTTGTTTTTGAAAACGTGAATTATTATATCGATATGCCAAATGAAATGAAGCAAGGAACTAAAGAGGATAGACTCCAACTACTAAGAGACATAAGTGGTGCTTTTAGGCCTGGAATTTTAACAGCATTAGTTGGTGTAAGCGGTGCTGGAAAAACGACTTTGATGGATGTGCTTTCAGGAAGGAAAACTAGTGGTTACATTGAAGGAGGTATCAGCATATCGGGTTATCCTAAGAACCAAGAAACGTTTGCTCGGATTAGTGGTTATTGTGAACAAAATGATATTCATTCTCCCAATATTACAGTTTATGAATCTCTTGTGTTTTCTGCTTGGCTGCGGCTCAGTAAAGAGGTTGATATTGAAACACGAAAGATGTTTATCGAGGAAGTTATCGAGCTAGTTGAGTTACGTCTAGTGAGAAATTTCTTAGTCGGCCTTCCTGGAATAGATGGCTTATCAACCGAGCAGAGAAAGAGGCTTACCATTGCTGTAGAGTTGGTTGCAAATCCTTCCATTATCTTTATGGATGAACCAACAACTGGTCTTGATGCTAGAGCTGCAGCAGTTGTTATGCGTACTGTTAGAAACACAGTCGATACAGGAAGAACTGTTGTGTGCACAATTCATCAACCAAGTATTGATATATTTGAAAATTTTGACGAGCTGCTTTTGATGAAGACGGGTGGACAAGTGATATATGGTGGTCCTCTAGGTCGAAATTCTGAGAAACTTATCGAGTACTTTGAGGCAATTACAGGAATTCCAAAGATCGGAGATGGATATAATCCAGCCACATGGATGCTGGATATCAGTTCTCCGGTGGTTGAGTCTCGGCTTAATATAGATTTCGCTGAATTATACAATAAGTCAAGCCTTTACCAACGGAACCAAGAACTTATCAAGGAACTATCCATACCAGCGCCTGGAACAAAGGAGCTTTACTTTCCATCTAAATACTCTCAATCATTTGTAACGCAATGCAATGCTTGCTTCTGGAAACAGTACTGCTCCTATTGGAGAAATCCACAGTATAATGCTGTCAAATACTTCGTTACAATAGTTATTGGTGTTTTGTTTGGACTAATTTATTGGAACAAAGGCGATAAGTTGGACAAGGAACAAGACCTTTTAAATCTCATTGGAGCTATGTATTCTTCGGTCATTTTCCTCGGTGCATCCAACACTAACAGTGTGCAGCCTACTGTTGCAGTAGAAAGAACAGTTCTATACCGCGAAAGAGCAGCTGGATTGTACTCAGAACTGCCATATGCAATTGGTCAGATTGCTATTGAAGTAATTTATGTTGCAATCCAAAGTCTGATATACTCTATTATCCTCTACTGGATGATTGGCTTCGAACCACAAGTTGAAAATTTCTTTTGGTTCTACTTCTTCATATTCATGTCCTTTATCTACTTCACATTATATGGAATGATGACGGTGGCTCTTACACCAAACCACCAAATTGCTGCAATTGTGATGTCTTTCTTCCTCAGCTTTTGGAACCTGTTCTCTGGTTTTCTTATTCCAAGAACGCAAATTCCGATATGGTGGAGGTGGTATTATTGGGCATCACCTGTGGCATGGACTATATATGGACTGGTGACATCCCAGGTGGGTGACAAGAACAGTCCGATCGAGGTTCCTGGATATAGGCTGATGACAGTAAAAGAATATCTTGAGAGGCAATTTGGATTTGAATATGACTTCCTTGGATTTGTTGTTTTGGCTCATATTGCATTTTGCCTTCTCTTCCTTTTTGTATTTGCCTATGGCATCAAGTTTTTAAACTTCCAGAAAAGATAA 4281 0.3924 MEAEMVEEDIFRPMSEGRKSKSFGELIRNSANEEEEELKWEGLWRLPTYDRMRKAILKQVLDNGKVNYEEVDITKLGVEEKKLLLESILKTAEEDNENFLHKMRDRIDRVGIEIPKIEVRFENLSVEGDAYDGTRALPTLINATLNVIEGLLSYIKILAFKKRVIRILKDISGIVKPSRMTLLLGPPGSGKTTLLQALAGKMDKDLRVSGRVTYNGNELSEFVPQRTCAYISQNDLHHGEMTVRETLDFSGRCLGVGTRYDMLTELSRREKAAGIKPDPEIDAFMKATSMEGQETSLVTDYILKILGLETCADILVGDEMRRGISGGQKKRLTTGEMLVGPAKALFMDGISTGLDSSTTFQIVRCMRQMVHIMDVTMIISLLQPAPETYNLFDDIVLLSEGEIVYQGPRESVLDFFESVGFKCPERKGIADFLQEVTSRKDQEQYWFRRDIPYEYVSVPDFVTNFNNYSIGKQLHEEIQVPFDSSKTHHAALVKEKYGIPKWEIFKACFSSEWLFMKRSYFVYIFKTFQMTIMSLITLSVFFRTTMDHGRLEDGGKFYGALFFSLVNVMFNGVAELAMTVNRLPVFFKQRDFLFYPAWTFALPIWVLRVPMSLLESGFWIILTYYTIGFAPSPSRFFRQLLAYFWVNQMALALFRFIAAIGRTRVVSNTLASITILVVFVLSGFTVSRDDIGPWMIWCYYASPMMYGMTAITINEFLDERWSAPNIDPRIDEPTVGKALLKARGIFTEDYWYWISIGALIGFSLLFNVCFILALTYLDPFTSSKSIIVDTGAEMEVRNKTHSSIPKAAKNAKFKKGMVLPFQPLSLVFENVNYYIDMPNEMKQGTKEDRLQLLRDISGAFRPGILTALVGVSGAGKTTLMDVLSGRKTSGYIEGGISISGYPKNQETFARISGYCEQNDIHSPNITVYESLVFSAWLRLSKEVDIETRKMFIEEVIELVELRLVRNFLVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFENFDELLLMKTGGQVIYGGPLGRNSEKLIEYFEAITGIPKIGDGYNPATWMLDISSPVVESRLNIDFAELYNKSSLYQRNQELIKELSIPAPGTKELYFPSKYSQSFVTQCNACFWKQYCSYWRNPQYNAVKYFVTIVIGVLFGLIYWNKGDKLDKEQDLLNLIGAMYSSVIFLGASNTNSVQPTVAVERTVLYRERAAGLYSELPYAIGQIAIEVIYVAIQSLIYSIILYWMIGFEPQVENFFWFYFFIFMSFIYFTLYGMMTVALTPNHQIAAIVMSFFLSFWNLFSGFLIPRTQIPIWWRWYYWASPVAWTIYGLVTSQVGDKNSPIEVPGYRLMTVKEYLERQFGFEYDFLGFVVLAHIAFCLLFLFVFAYGIKFLNFQKR* 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2450 1426 Pfam ABC-2 type transporter 1150 1362 IPR013525 GO:0016020|GO:0140359
Tpr1g2450 1426 Pfam ABC-2 type transporter 505 716 IPR013525 GO:0016020|GO:0140359
Tpr1g2450 1426 SMART AAA_5 862 1054 IPR003593 -
Tpr1g2450 1426 SMART AAA_5 177 402 IPR003593 -
Tpr1g2450 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 152 425 IPR003439 GO:0005524
Tpr1g2450 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 424 IPR027417 -
Tpr1g2450 1426 PANTHER ATP-BINDING CASSETTE TRANSPORTER 58 1426 - -
Tpr1g2450 1426 Gene3D - 828 1074 IPR027417 -
Tpr1g2450 1426 Pfam ABC-2 type transporter 383 437 IPR043926 GO:0140359
Tpr1g2450 1426 Pfam ABC-2 type transporter 1034 1105 IPR043926 GO:0140359
Tpr1g2450 1426 Pfam Plant PDR ABC transporter associated 729 787 IPR013581 -
Tpr1g2450 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 205 IPR027417 -
Tpr1g2450 1426 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 58 1426 - -
Tpr1g2450 1426 CDD ABCG_PDR_domain2 823 1060 IPR034003 -
Tpr1g2450 1426 Pfam ABC transporter 853 1004 IPR003439 GO:0005524
Tpr1g2450 1426 Pfam ABC transporter 168 348 IPR003439 GO:0005524
Tpr1g2450 1426 Pfam ABC-transporter N-terminal 92 143 IPR029481 -
Tpr1g2450 1426 CDD ABCG_PDR_domain1 155 407 IPR034001 -
Tpr1g2450 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 826 1077 IPR003439 GO:0005524
Tpr1g2450 1426 Gene3D - 158 452 IPR027417 -
Tpr1g2450 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 848 1061 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2450 Tpr-Chr1 27611595 27618728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2450 850 1037 Calmodulin-binding Proteins AT2G36910 28.155 5.99e-07 52.4