Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2440 ATGGCGAAGGGTGACGACTCCATCCTAAAAAAGCGGAACAAAAAGATTAGAAAAAGACTAAGCGGCAAGACTGACAAGACCACTGTCTCTGCTAAGATTGCCGCTGTTATCGCCGCCAAGAAACGCCGCAAGGCCGGTAAACGCCGCATCTGCGAGGGTATGTGTTTTAGTTTACCTAGTCTAGATGATCCATTCAATGATAGACGTGGGAAACCGGAATTCAAAAAAAAGGAGGAACCTGAAAAGAAAAAACCTTTCCAAAAAGAAAAGGCGCTTCCTGTTAAAGGGAAGAGTGCACCCAGTGGGAAAGGCGCAGTTCGTCAAAGTATTTCACACAAATTGAATCAACAAACAGGAAATGATGATACTAACAATAAAAGTCACTCGGAAAAGGATAATGAAATTTCAGACTTCCCATCTAAATTTGTTTTTTGGTGTCTGAGTGCAATTGAAAACGCACTGCGACATGATGATGCCTACACTGATGGAGAGGGCAACTCTTTCTTTCTTAACTCGTGGGGATTAGAATTTTCAAAGTGTTTTCCTACCGGCAAAGATCTCATGGACACTGGTGGAACCTTTGCTACTACTGAGCAAATTGCATGGATGGTTTCTGCGGCAGCTGATACTTTTGTTAGAAAAGAGAAACAAGGCGTATCAATAGACACCCCTTTTCTTTTGTTCCTCGTTCCTTCCGAAAAAAAAGCTGCCCAGGTTCGAACGGTTTGCAAACCTTTGAAATCTGTAGGAATACATACAGTGAGTATTCATCCTGGCGCTTCCTTAGATCATCAGATCCAAGGTCTGAAAAGTTGTGAGCCTGAGTTTCTCATTTCTACTCCTGAGAGGCTCTTGGAACTTGTTTCAATGAAGGCAATTGATATTTCTGGCGTCTCTATGCTGGTTATTGATGGGCTAAATGCTATTTGTAATGCTGGCCACGCTGATGCAATAAAATCCATCAAGATGTTTATTTCTGGCAATCCCAGTCTTGTGGTTTTCAATGATAGCTTCAACAATACATCTATCCCAGTTGTTCAGCATCTTTTGACGGGACCTATTTGTAGAATATCTATCAATAATTCAATCGACAGCCTAAGTTCATGCATTGTACAGTCTGTTCAAGTGTGTACATCAGACAAAGATAAACGTGTTAAGAGCCTCGATATCCTATGTCAATTTTGGAGCAGCCAGAATCATAATTCAAACCTTCTATATATCTTGAGGAAGGATGTCAAGTGCCATAATTTAGTGAAGGCTCTCGAATCCATGGGTTGTTCCACGTCACTTGATTCTAATGCAGCGAATATTAATAATAGTGTGGATTCAAACCGGAAATTGGTTACAATGATTGATTTGGAGGATATCTCTACTGTGGATATAGGGATGTATGATGTAATAGTCCTGCCAACTTTTGTACCCTCCATGGACACTTACGAGCATATTTTGACAAACATGGCACGCCAAAGTGTCAACGGTGTTTTGCACGGTTTCTTAACAAAAAGTGATACAGAACTAGCTGGACCACTCATTTCAATTCTTGAACAATGTAAGCAGGAAGTGCCTGAGACCCTGCAAGATCTGCATCAGGCATCAAACATGTTGGAAGATTGA 1614 0.4114 MAKGDDSILKKRNKKIRKRLSGKTDKTTVSAKIAAVIAAKKRRKAGKRRICEGMCFSLPSLDDPFNDRRGKPEFKKKEEPEKKKPFQKEKALPVKGKSAPSGKGAVRQSISHKLNQQTGNDDTNNKSHSEKDNEISDFPSKFVFWCLSAIENALRHDDAYTDGEGNSFFLNSWGLEFSKCFPTGKDLMDTGGTFATTEQIAWMVSAAADTFVRKEKQGVSIDTPFLLFLVPSEKKAAQVRTVCKPLKSVGIHTVSIHPGASLDHQIQGLKSCEPEFLISTPERLLELVSMKAIDISGVSMLVIDGLNAICNAGHADAIKSIKMFISGNPSLVVFNDSFNNTSIPVVQHLLTGPICRISINNSIDSLSSCIVQSVQVCTSDKDKRVKSLDILCQFWSSQNHNSNLLYILRKDVKCHNLVKALESMGCSTSLDSNAANINNSVDSNRKLVTMIDLEDISTVDIGMYDVIVLPTFVPSMDTYEHILTNMARQSVNGVLHGFLTKSDTELAGPLISILEQCKQEVPETLQDLHQASNMLED* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2440 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 ISOFORM X1 1 536 - -
Tpr1g2440 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 354 IPR027417 -
Tpr1g2440 537 MobiDBLite consensus disorder prediction 104 123 - -
Tpr1g2440 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 536 - -
Tpr1g2440 537 MobiDBLite consensus disorder prediction 1 28 - -
Tpr1g2440 537 Gene3D - 215 365 IPR027417 -
Tpr1g2440 537 MobiDBLite consensus disorder prediction 66 91 - -
Tpr1g2440 537 Pfam DEAD/DEAH box helicase 208 325 IPR011545 GO:0003676|GO:0005524
Tpr1g2440 537 MobiDBLite consensus disorder prediction 66 133 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2440 227 528 Eukaryotic Initiation Factors Gene Family AT1G72730 20.820 2.10e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2440 - - gmx:100809099 688.723