Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2433 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTACATATATGATTATTTGGTGAAGAAAAAGTTGCACAATACCGCCAAGTCATTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGACTCAACAGATTAAAGCGAAAGAACAACAATTGCAAATGCAGCAGTTGCAATTAATGCGTCAAGCTCAGCTGCAAAAAAGAGATCCTAACCATCCTCCCATTGGAAGTCCGCTACATGCTATCTCCACAGAAGGAGTCCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAGCTCTAATCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGCAAATTCAGGAAGTGTGACAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAATCCCTGATATCAAAAGCGAAGTCAACATGGGAAACATGCAAAGATCTTTACCTATGGATCCTTCTTCCATTTATGGGCAGGGAGGAATGCAATCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGAGTTGGTGGTCTTACATTAAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAGCAGCAGCTCCTTGCCCAGGCACATGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAGCGATTAAGGGGATTAGCTAGGGGAGGTTTGAATGTGAAAGACAGTCAACCAACTGCAAATGATGGACCTATAGGTTCTCCGATGCAATCTACTTCATCTAAGATCAACATGCCACAGATGCAACAATCCATCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAAATGGTTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCGAATAGTACTGGTACAGGAAATACACATGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGGGTTGCTATGGTGGGTAACTTGCAGAATGTTACTGGTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGAAAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGGAAGGACTTATTTGGGACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGCCTTTTCCTTCAATGAAGTTGGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCGTCAGATGGGAAAATATTAGCCAGTGCGGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGTTATTATTACCGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACGTCTTCGTTTGATACAACTGTGCGGCTTTGGGATGCTGCAGATCCAAGCTTTTCTTTGCAGTCATATAGTGGTCATACTTCACATGTTGCATCCCTTGATTTTCACCCTAAGAAAAATGATATTTTCTGCTCATGTGATGATAACAATGAGATTCGCTTATGGAATATTAGTCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTTAGGTTTCAGCCGAGGAGTGGACACCTTCTGGCTGCAGCATCCGGCAATGTTGTGTCTGTCTTTGATGTTGAGACTGACAGGCAAATGCACTCATTACAGGGACACTCTGCAGAGGTACATTGTGTATGCTGGGATACAAATGGAGATTATTTGGCATCTGTCAGTCAAGAATCTGTCAAAGTTTGGTCACTTGCCTCTGGTGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCAATCTTGTGTTTTTCACCCAAGCTACTCCAACCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGGCTGAAAATAAATGTATGACCATACCAGCTCATGAAGGTGTAATATCCGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGCCATGACAAGTCTGTAAAGATATGGAAATAA 2346 0.4305 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLETQQIKAKEQQLQMQQLQLMRQAQLQKRDPNHPPIGSPLHAISTEGVLGQSTATALAAKMYEDRMKSSNPMDTETSQPLLDARMALLKSTNHPGQMVQANSGSVTALQQMQARTQQIPDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKDSQPTANDGPIGSPMQSTSSKINMPQMQQSISQQQQDPLHPQQMVQNNRKRKGPTSSGAANSTGTGNTHGPSNSQPSTPSTHTPGDGVAMVGNLQNVTGVSKGLMMYGTEGAGGLASSTNQLDDMEHFGDVGSLDENVESFLSQDDGDGKDLFGTLKRNPSEHATDASKAFSFNEVGSIRKSNGKVVCCHFSSDGKILASAGHDKKVVLWNMETLQTQSTPEEHTVIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQSYSGHTSHVASLDFHPKKNDIFCSCDDNNEIRLWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASGNVVSVFDVETDRQMHSLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFQSCVFHPSYSNLLVIGGYQSLELWNMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKIWK* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2433 781 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Tpr1g2433 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 574 IPR001680 GO:0005515
Tpr1g2433 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 574 - -
Tpr1g2433 781 MobiDBLite consensus disorder prediction 321 405 - -
Tpr1g2433 781 Pfam LisH 10 36 IPR006594 GO:0005515
Tpr1g2433 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 781 IPR001680 GO:0005515
Tpr1g2433 781 SMART WD40_4 535 574 IPR001680 GO:0005515
Tpr1g2433 781 SMART WD40_4 578 618 IPR001680 GO:0005515
Tpr1g2433 781 SMART WD40_4 621 657 IPR001680 GO:0005515
Tpr1g2433 781 SMART WD40_4 742 781 IPR001680 GO:0005515
Tpr1g2433 781 SMART WD40_4 493 532 IPR001680 GO:0005515
Tpr1g2433 781 SMART WD40_4 701 740 IPR001680 GO:0005515
Tpr1g2433 781 SMART WD40_4 660 698 IPR001680 GO:0005515
Tpr1g2433 781 Coils Coil 79 106 - -
Tpr1g2433 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 585 620 - -
Tpr1g2433 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 707 IPR001680 GO:0005515
Tpr1g2433 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 781 - -
Tpr1g2433 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 541 IPR001680 GO:0005515
Tpr1g2433 781 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 781 IPR044716 GO:0003714
Tpr1g2433 781 Pfam WD domain, G-beta repeat 663 698 IPR001680 GO:0005515
Tpr1g2433 781 Pfam WD domain, G-beta repeat 582 618 IPR001680 GO:0005515
Tpr1g2433 781 Pfam WD domain, G-beta repeat 537 574 IPR001680 GO:0005515
Tpr1g2433 781 Pfam WD domain, G-beta repeat 505 532 IPR001680 GO:0005515
Tpr1g2433 781 Pfam WD domain, G-beta repeat 748 781 IPR001680 GO:0005515
Tpr1g2433 781 SUPERFAMILY WD40 repeat-like 493 781 IPR036322 GO:0005515
Tpr1g2433 781 Gene3D - 635 781 IPR015943 GO:0005515
Tpr1g2433 781 SMART Lish 8 40 IPR006594 GO:0005515
Tpr1g2433 781 MobiDBLite consensus disorder prediction 318 412 - -
Tpr1g2433 781 PRINTS G protein beta WD-40 repeat signature 519 533 IPR020472 -
Tpr1g2433 781 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Tpr1g2433 781 PRINTS G protein beta WD-40 repeat signature 768 781 IPR020472 -
Tpr1g2433 781 CDD WD40 496 781 - -
Tpr1g2433 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 627 IPR001680 GO:0005515
Tpr1g2433 781 Gene3D - 476 634 IPR015943 GO:0005515
Tpr1g2433 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 535 - -
Tpr1g2433 781 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Tpr1g2433 781 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2433 Tpr-Chr1 27434839 27450858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2433 579 780 Miscellaneous Gene Families AT5G08390 23.671 5.22e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tpr1g2433 WD40 0.0086 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2433 - - gmx:100797756 1345.49