Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2427 ATGAAGAGTAAACTACTGGACCTGGGGGAAGCAGTTGGAACTCAAAGCCGAAGTCTTCCTCAAGAACTTATTGATACGCTTCCAACCTCAAAGTACAAATTTGGCAACTTATTCAAAAGAAAAAATTTGCCATGCAGTTATGTTTATCATGGTGAATGCATTACAAATGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACATTGATGTTTTCGGGGATAATTTTGACCAATCTACTTCAAAATCTAATGACAAGAATTCATGTGCCAGAAACAAGGGAAGATAATAGTCAAAGAAGGAACCAATTGTTGTGGATCTTAGCATAG 327 0.367 MKSKLLDLGEAVGTQSRSLPQELIDTLPTSKYKFGNLFKRKNLPCSYVYHGECITNGLALTRNVLFATLMFSGIILTNLLQNLMTRIHVPETREDNSQRRNQLLWILA* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2427 108 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 4 42 - -
Tpr1g2427 108 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 42 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2427 Tpr-Chr1 27352904 27355610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2427 4 62 C3H Transcription Factor Family AT3G63530 48.101 3.62e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2427 K19045 - gmx:100785290 91.2781