Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2425 ATGGCAAAGAGGAAGAGCTGGTTTGGATGGGTGAAAAGTCTTTTCATTTCTGAGTTAAAGGACAAAAAGCAAAAGAAATGGATATGGAGATTAGGAAGGATTAAACAGAAGCAATATCCTACAATTACAGCTTCAAACAAGACATTGATTGAAGTTGCAAGTGCAGAGCAGAGAAAACACGCTTTAGCTGTGGCTATTGCAACAGCTGCTGCAGCAGAGGCTGCAATTGCTGCTGCACATGCTGCTGCTGAGGTTGTCAAGCTCACAGATGGCTCTTCTCGTTCGTATTCATATCTCTCTAAGGGAGACAGAAGTTTTGCTGCCATCAAGATTCAAAGCGCTTACCGCGCACATCTTGCTAGGAAAGCATTAAGAGCATTGAAGGGAGTTATAAGACTACAGGCCATAATTCGTGGAGAAGCTGTTAGGCGTCAAGTGATTAGAACATCAAAGAATGTTCCATCTTATGCAAAAAACCGGAAGGAAATCCAGGAAAGAAGCAGCCATACTGAGGAAGAAAACTACAAAAATGACCATATAAAACAGTTTCCAAAGGAAAAGAAAAGAATAGAAGAAAATGAACTTAAGGGAAAGTTTGCATTGATTTTGAGGAGTCCTAGTGTCAAATCCACTCAACATGTTTTGCAGCCTGAATGTGATAATCAAAGAACTTGGAATTATAGTTCTTGCTCAAGAGAAGACATTGAAGCCATATGGTTAAGAAAGCAAGAAGCTATTGTCAAAAGAGATAGGATGAGGCAATACTCTTCTTCACAAAAGGAGAGAATATTTTCCCAAAGGGTGGAAGAATCTCTACAAAACAAAGAATTTGGAGGAGATAGTTGTCATACTCTAGGAGAGTGGCTACATAAAGAAACATGTAACTGGAATGATCCTTCAAATATCACAATAAGAAATGAAGTGCAAGAAGGATTAAGATCGCAAATTTCAGTCCAAAGAAAATCATTTTCTCATGTGAAAACAAGTTCAATTGGAGATGAGAGTTCCATGCCAAATTCTCCATTTTTCCCTAAATACATGGCTCTCACTGAATCTAGTAAAGCAAAAGTAAGGTCTATGAGCACACCAAGGCTAAGAACATGA 1104 0.3877 MAKRKSWFGWVKSLFISELKDKKQKKWIWRLGRIKQKQYPTITASNKTLIEVASAEQRKHALAVAIATAAAAEAAIAAAHAAAEVVKLTDGSSRSYSYLSKGDRSFAAIKIQSAYRAHLARKALRALKGVIRLQAIIRGEAVRRQVIRTSKNVPSYAKNRKEIQERSSHTEEENYKNDHIKQFPKEKKRIEENELKGKFALILRSPSVKSTQHVLQPECDNQRTWNYSSCSREDIEAIWLRKQEAIVKRDRMRQYSSSQKERIFSQRVEESLQNKEFGGDSCHTLGEWLHKETCNWNDPSNITIRNEVQEGLRSQISVQRKSFSHVKTSSIGDESSMPNSPFFPKYMALTESSKAKVRSMSTPRLRT* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2425 367 MobiDBLite consensus disorder prediction 158 186 - -
Tpr1g2425 367 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Tpr1g2425 367 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Tpr1g2425 367 MobiDBLite consensus disorder prediction 157 186 - -
Tpr1g2425 367 PANTHER IQ-DOMAIN 12 1 366 - -
Tpr1g2425 367 PANTHER IQ-DOMAIN 5-RELATED 1 366 - -
Tpr1g2425 367 Gene3D - 104 153 - -
Tpr1g2425 367 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Tpr1g2425 367 Pfam Protein of unknown function (DUF4005) 334 366 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2425 Tpr-Chr1 27331054 27334189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2425 1 367 IQD Protein Family AT5G03960 41.818 1.41e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2425 - - cam:101513369 513.072