Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2423 ATGTGTTCCATGGCAGAGCTTGGCCATTCAAAACTGATCACACTATTGCTGCCCCTCCTCCTCCTCCTCCTCCTTGTAAAAAGTGGCAGCGGTCATGACGAGTGCCGGGAATTGTCTTGTGGACCTTACGAACCTCGTGTTAAATTCCCCTTTCAACTAGTCAAAGGTCCACAAGATCGATGTGCTTTTCCTGAGTTTTGCCTATACTGTGATGACCATAAGAAAACTATGCTTTCACTCCCAACAACTTCAGGTCCGATCAAATTCCTTGTTGTTGAGATATACTACAAACCACAGTCGATTCGACTGATGGACCCGGACAATTGTATTCCAATGAAGTTTCTCAAACTTAACGGTTCATCATTTCTATCTTATCATTTTTATTCAGTACCAGTGACAAATATCACCTTCCTCAACTGCTCTTCAGTTGAGCATCGATACCGGAGAAGGTATTCGCAAGATATGTTTAAATGTCCAATTTATGTTTCAAATTCATACCAAAGTGTCTTGGGATTGGGCCTTGAGTCGTGTACCAAGATGTTCGAAGTCACAGCATCCACCAGTCTAGATGAGCTACCATATAGTTGGTCGTTGAACTTGAGTTGGCCAAAACCTGATTGTACTGAGTGTGAAGCCAAAGGCAAAAGGTGTAGATGGAACCATAACAGCACCAAAGGTGACATTGAATGTTTCGACTGTATTAGAAAACAGAAATCAATCCATATTCCGAAATTTCTTATTTTCGTCGCTACAGGTTCAATTCTTTTAGGGTTGGTGATGATTGCAATTATTAAGATCTATTTATATTTTAGAGAAAAAGAAGAAGATCAAGTTAGAGTTGACAAATTTTTAGAGGATTATAGAGCACAACAACCTACTAGATTTTCCTACGCTGATATAAAAAGAATGACAAGTAGATTCAAGGAAAAAGTAGGAGAAGGAGCTCATGGAAAAGTATTTAAAGGAAAACTCTCGAACGAGATTTTGGTCGCGGTGAAGATGCTCAACAATACCACCGAGGGAGAAGGGAAAGAGTTCATTACAGAAGTGGGAATTATGGGCCAAATCCATCATATCAACGTGGTTCGTTTGCTAGGATTTTGTGCAGAGGGATTCCACCGCGCTCTTGTTTACAATTTGTTTCCTGAGGGCTCCCTACAAAGTTTCATATTTCCACCAGATAATACAGACCATTTCATGGGGTGGGAGAAGCTACAACAAATTGGTATTGGCATAGCAAGAGGAATTGAGTATCTTCACGACGGTTGTAATCATTCAATCCTTCACTTCGACATCAACCCTCACAATATTTTGCTAGATGACTCGTTCACTCCAAAAATATCTGATTTTGGTCTTGCCAAACTATGTCCTAAGAATCGTAGTGCTGTGTCAATGACAGCTGCTAGGGGAACCTTGGGATACATGGCACCTGAAGTTCTATCACGAAATTTTGGAAATGTGTCTCTTAAATCGGATATTTATAGCTATGGGATGTTGTTGTTAGAAATGGTTGGAGGAAAGAAGAATATAGACGTATCATCTCCCGAAAATTTCCATGTTTTATATCCCGATTGGATTCATAATTTATTGGAAGGAGACGTACATATCAATATTATTGAGGATGAATGTGGTTTTAAAATTGCAAAAAAACTTGCGATTGTTGGACTTTGGTGCATTCAATGGCAACCGGTGAACCGTCCATCCATAAAATCGGTCATACAAATGTTGGAAACCGGAGAGGAGGACAGCCGGTTAAATGTGCCTCCTAATCCCTTTCACTCAACGACTTCAATTACCGCTACTGAAAGCAGTTTGCCAAGACGGCCTTTTCAAATGGAAGTGATTCATGAATAA 1854 0.4013 MCSMAELGHSKLITLLLPLLLLLLLVKSGSGHDECRELSCGPYEPRVKFPFQLVKGPQDRCAFPEFCLYCDDHKKTMLSLPTTSGPIKFLVVEIYYKPQSIRLMDPDNCIPMKFLKLNGSSFLSYHFYSVPVTNITFLNCSSVEHRYRRRYSQDMFKCPIYVSNSYQSVLGLGLESCTKMFEVTASTSLDELPYSWSLNLSWPKPDCTECEAKGKRCRWNHNSTKGDIECFDCIRKQKSIHIPKFLIFVATGSILLGLVMIAIIKIYLYFREKEEDQVRVDKFLEDYRAQQPTRFSYADIKRMTSRFKEKVGEGAHGKVFKGKLSNEILVAVKMLNNTTEGEGKEFITEVGIMGQIHHINVVRLLGFCAEGFHRALVYNLFPEGSLQSFIFPPDNTDHFMGWEKLQQIGIGIARGIEYLHDGCNHSILHFDINPHNILLDDSFTPKISDFGLAKLCPKNRSAVSMTAARGTLGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGKKNIDVSSPENFHVLYPDWIHNLLEGDVHINIIEDECGFKIAKKLAIVGLWCIQWQPVNRPSIKSVIQMLETGEEDSRLNVPPNPFHSTTSITATESSLPRRPFQMEVIHE* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2423 617 PANTHER RUST RESISTANCE KINASE LR10-RELATED 22 617 IPR045874 GO:0004672
Tpr1g2423 617 Pfam Protein kinase domain 307 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2423 617 SUPERFAMILY Protein kinase-like (PK-like) 287 577 IPR011009 -
Tpr1g2423 617 Gene3D Transferase(Phosphotransferase) domain 1 381 588 - -
Tpr1g2423 617 ProSiteProfiles Protein kinase domain profile. 305 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2423 617 Pfam Wall-associated receptor kinase galacturonan-binding 35 105 IPR025287 GO:0030247
Tpr1g2423 617 PANTHER RECEPTOR-LIKE KINASE 22 617 - -
Tpr1g2423 617 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Tpr1g2423 617 Gene3D Phosphorylase Kinase; domain 1 278 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2423 Tpr-Chr1 27313136 27315300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2423 252 604 Receptor kinase-like Gene Family AT4G18250 41.160 2.38e-89 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g2423 Pkinase 3.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2423 - - gmx:100790964 816.224