Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2371 ATGGATCATAATAACAATTCCAATCACTCCCTTTCCTACTCCACTCTTTTCAATCTCCAGTCTTTGGTGAATTTTCAACTTCCACAACATGATGATGAATTTGATTATTACGGGAATAGTAGTCAGGATGAAGAAGAAAGCAGAGATAGTCGTCGAGGTGGTGGGGGGGCAATTGGAAATCACAGTAATGGGAATATGGATTCAAAGGATGTGAATTTGTCGAAGAAGAAAAGGGTGCGATCTCAAAACAGTGATGACGAGGACAAAGGAAGTTTTTACAGGGCATACGTGACAGAGGAGCAATATCGCTCAATGTTGGGTGACCATGCTCATAAATACAAGAGGAGGTCTAAGGATACTACCTCTAGTCATGCACAAAATCAGGGCGCTGTCCCGCATGTTAAAAGTAATAATAATGGATTAAAAGCTCATAAGTTAGGGAATGATAACCGGGGAGGATTGCACGCTGCTGAGACTTTATCTGAATGGTTATATAATTCCAATTCTCAGAAACATGGAAACTACCGTAATGCAGATTTAGTGCAGAGAAATGGCACTGATAGGGTTATGTATGAACCTTCTATTTTAGAAATTGGGGATGGTATCACATACAAGATTCCTCCAATTTATGATAAGCTGGCTACAACGCTGAACCTTCCAAGCTTCTCAGATATCCATGTGGATGAATTTTACTTGAAGGGTACTTTGGATTTAGGGTCATTGGCTGCAATGATGGCTGCTGACAAAAGGTTAGGAAATAAAATCCGAGCAGGCATGGGGGAACCCCTATTTCAATATCAATCGCTTCAGGAACGAATAAAGGCCATGTCAGCTTCTAATTCACCTCAAAAATTTAGTCTGAATGTGTCTGATATTGGTTTGAATTCATCCATTCCGGAGGGGGCTGCTGGAAGCATAAAGCGGTCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCCTACCCAAGAAGCAAAAGGTAAAGAAAGACCCTGCTTCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTACTCTTCATCGAAAGCAACTCATTGATGCCAAGAGGTGCTCAGAGTACTGTCAAAGAGAGGTTAGATTGAAAATTAGTAGATCACTTAAATGGAATAGGGGTGCTAGCATTCGCACCCGGAAACTAGCCAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGCCGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTAAGACGTGAACAGGAGCTCCGAGAAGCAAAGAGACAGCAGCAAAGGCTGAATTTTCTGATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAACAAGTCAGATTTACTATCTTCGGAAGCTTTACCCATGGCAGAGGAAAAAACAAATGATCAAGATGCACCGTTCATCTCATCAGATGCTGGGCCTAACGAGGAAGAAGATCCAGAGGAGGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTTTAAGCAGAAAAAGTTGACTAATGCTTTTGACAGTGAATGTTTGAGGCTGCGGCAGGTGGGTGAAGCTGATCCACTTACGCAGGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGCTTCCACAGTTCAAACACCTGAATTATTTAAAGGTTGTCTAAAAGAATACCAGCTGAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAAGCTATGGTTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGGACTTAAAAGACTTCCGTATTGGGGAGGGCTTTCGGAGAGGACAGTACTAAGGAAAAGTATTAACCCAAAGGACCTTTATCGTAGGGAAGCTAAATTTCACGTACTCATCACAAGCTATCAGCTATTAGTATCCGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTACATGGTTTTAGACGAAGCCCAGGCAATTAAAAGTGCAAACAGTATAAGGTGGAAAACACTTCTTAGCTTTAATTGCCGGAATCGTCTACTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGCTGTGGGCTCTTCTGCATTTCATCATGCCAACTTTATTTGACAGCCACGAGCAGTTTAACGAGTGGTTCTCAAAAGGAATTGAGAACCATGCAGAGCACGGGGGTACTTTGAATGAGCACCAGCTTAATAGATTGCATTCAATTCTAAAACCTTTCATGCTAAGGCGTGTTAAAAAAGACGTAGTTTCTGAGTTGACACAAAAAACTGAGGTTATGGTGCATTGCAAGTTGAGCTCTCGGCAGCAGGCTTTCTACCAAGCAATTAAGAACAAGATATCTCTGGCTGAACTATTTGATAGTAATCGTGGGCAGCTTAACGAGAAGAAAATTCTAAATTTGATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTCGAAAGGAATGAGGGAAACACATATTTTTACTTTGGTGAGATTCCAAGTTCCCTTCCACCTCCTCCATTTGGCGAGTTGGAGGATGTTTACTATGCTGGAGGTCTCAACCCCATATCATTTCAGATACCAAAGCTTGTCTATCAGGATATTATGCAAAGCTCTGAGACTCTCAGTTCAGCTGTTGGTCGTGGTGTCTCTAGAGAAACCTTTCAGAAACATTTTAATATTTTTGAACCAGAAAATGTCCATCGATCTATTTTCTCAGAAGAAACAAATGTTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCAAGAGGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGACTGTTATTTTCTATGATGAAATGGGAAAAAAATGTCTTTGACGAAGTTGGAGACTTTCTTACAGAATACATTGTAGATGATCCTGAATGTAATTTCCTCGAAAAAGGTAAAGTGAGAGCTGTTACAAGAATGTTATTGCTACCATCCAGATCTGAGACCAAGTTTCTTCAGAAAAGGTTTGCAACCGGGCCCTCCCATGCCCCTTTCGAGGGCTTGGTAGTCTTACATCAGGATAGGCTTTTATCTAACGCAAGACTTCTTCATTCAGCATACACATACATCCCACCAACAAGAGCTCCCCCTATTGATGCTCATTGCTCTGATAGAAACTTCTCCTATAAAAAGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTTTTTGTTGGATTTGCACGTACATCTGAATGTAATGGGCCTAGAAAGCCCAATCACCATCATCATCATTATTTAATTCAAGAGATCGATTCTGAATTACCTGTTTCACAGCCTGCTCTGCAGTTAACTCACAGTATTTTTGGCTCCACACCACCTATGCGAAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACACTTGATATATTACTGAAACGCTTACGCGCCGGAAATCATCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATACAAGTATTTTAGACTTGATGGGTCATCTACAATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAACAAAGGAGCGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACGGTCATATTTTATGAGAGTGATTGGAATCCGACATTGGATCTTCAAGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACAGTTTATCGACTTATATGTAAAGAGACTGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACCGTACAGAACCTTGTTATGACTGGTGGTTCTGTTGGCGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTTTGGATGATGTCCAATTGCAACAAAAATTTAAGGAAATCCCTCTCCAGGTAAAGGATAGGCAAAAGAGAAAACAATCAATGAAGGGCATTCGAGTAAGCGAAGATGGTGATGCATCTCTGGAAGATTTGACAAACTCTGTAGCTCAGAATATTGCAGATAATGATGCTTTTGTGGAGCCGGATGGGATAAAGTCCAGTAATAAAAAGAGAAAAGCAACTTCAGACAAGCAAACTTCAAGATCAAAGAATTCTAAAAAGATGAGTGAACTTGGCAATATGCCTATAAATGAACCGGATGATGTCCATCTAAATAATGATTCAGCAGGCCAGAAACCAAAGAGACCAAAGCGGACAAAGAAGAATGTAAATGAAAAGCATGAAGAAGTTTTTATTGGGACAGCCACCATTTTACCAGAGCAGACCCAATTTCCTCCTTCACAGGATTTCAGTTTTGGAGGTTCTAAAGCAGAGACAGTTCAAGACTCATGA 4629 0.4083 MDHNNNSNHSLSYSTLFNLQSLVNFQLPQHDDEFDYYGNSSQDEEESRDSRRGGGGAIGNHSNGNMDSKDVNLSKKKRVRSQNSDDEDKGSFYRAYVTEEQYRSMLGDHAHKYKRRSKDTTSSHAQNQGAVPHVKSNNNGLKAHKLGNDNRGGLHAAETLSEWLYNSNSQKHGNYRNADLVQRNGTDRVMYEPSILEIGDGITYKIPPIYDKLATTLNLPSFSDIHVDEFYLKGTLDLGSLAAMMAADKRLGNKIRAGMGEPLFQYQSLQERIKAMSASNSPQKFSLNVSDIGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHRNFTTLHRKQLIDAKRCSEYCQREVRLKISRSLKWNRGASIRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSDLLSSEALPMAEEKTNDQDAPFISSDAGPNEEEDPEEAELKKEALKAAQEAVFKQKKLTNAFDSECLRLRQVGEADPLTQEVAGASNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLKRLPYWGGLSERTVLRKSINPKDLYRREAKFHVLITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTQKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERNEGNTYFYFGEIPSSLPPPPFGELEDVYYAGGLNPISFQIPKLVYQDIMQSSETLSSAVGRGVSRETFQKHFNIFEPENVHRSIFSEETNVESGNFGFTHLMDLSPQEVAFLATGSFMERLLFSMMKWEKNVFDEVGDFLTEYIVDDPECNFLEKGKVRAVTRMLLLPSRSETKFLQKRFATGPSHAPFEGLVVLHQDRLLSNARLLHSAYTYIPPTRAPPIDAHCSDRNFSYKKIEELHDPWVKRFFVGFARTSECNGPRKPNHHHHHYLIQEIDSELPVSQPALQLTHSIFGSTPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKEIPLQVKDRQKRKQSMKGIRVSEDGDASLEDLTNSVAQNIADNDAFVEPDGIKSSNKKRKATSDKQTSRSKNSKKMSELGNMPINEPDDVHLNNDSAGQKPKRPKRTKKNVNEKHEEVFIGTATILPEQTQFPPSQDFSFGGSKAETVQDS* 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2371 1542 Coils Coil 434 473 - -
Tpr1g2371 1542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 609 780 IPR014001 -
Tpr1g2371 1542 CDD SF2_C_SNF 1205 1337 - -
Tpr1g2371 1542 MobiDBLite consensus disorder prediction 38 92 - -
Tpr1g2371 1542 MobiDBLite consensus disorder prediction 70 92 - -
Tpr1g2371 1542 ProSiteProfiles DBINO domain profile. 362 487 IPR020838 GO:0003677
Tpr1g2371 1542 SMART helicmild6 1243 1326 IPR001650 -
Tpr1g2371 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 825 IPR027417 -
Tpr1g2371 1542 Gene3D - 1168 1429 IPR027417 -
Tpr1g2371 1542 MobiDBLite consensus disorder prediction 111 139 - -
Tpr1g2371 1542 SMART ultradead3 593 788 IPR014001 -
Tpr1g2371 1542 MobiDBLite consensus disorder prediction 1398 1417 - -
Tpr1g2371 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 827 1396 IPR027417 -
Tpr1g2371 1542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1217 1401 IPR001650 -
Tpr1g2371 1542 MobiDBLite consensus disorder prediction 1431 1542 - -
Tpr1g2371 1542 Pfam Helicase conserved C-terminal domain 1217 1326 IPR001650 -
Tpr1g2371 1542 Pfam DNA-binding domain 358 485 IPR020838 GO:0003677
Tpr1g2371 1542 MobiDBLite consensus disorder prediction 1442 1463 - -
Tpr1g2371 1542 Pfam SNF2-related domain 612 899 IPR000330 GO:0005524|GO:0140658
Tpr1g2371 1542 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1505 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Tpr1g2371 1542 PANTHER HELICASE SRCAP-RELATED 16 1505 - -
Tpr1g2371 1542 Gene3D - 569 850 IPR038718 -
Tpr1g2371 1542 MobiDBLite consensus disorder prediction 1515 1542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2371 Tpr-Chr1 26590798 26602623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2371 650 898 RAD5 or RAD16-like Gene Family AT1G61140 24.516 2.64e-12 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr1g2371 SNF2_N 1.2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2371 K11665 - gmx:100780615 2425.59