Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2366 ATGAGGAAAAAAGTTACTCCATCATCTACTTTTCATAATCCATTTTCTTCTTATAATTATCATGATGATAATAATAATAAGCACACAAAAATTAACACTGCAAATTTACAAGGTTCAACAAGAATATACAAGTGTGATTTGTGCAGCAAAAGCTTCAGCTCCGGCAACGCACTCGGTGGCCACAAATCATCTCACAAGAAGCAAAAGACACATCATGATGATGATAATGAGAAACCGGAACATAGTTGTTGTCAGGTTTGCAAGAAGTTTTTTTCATCTAATAAGGCTTTATATGGACACATGAGATCACACAAAAGAGATGGCAAGAAGGTTATTCATCCACCACCAACTATATCCTCCTCCTTGGAGCATAATAATGATGTTGATGAAGATCGATTTCTACTTAGGGCATCGGTTCTTGACTTATCAAATTATTTCCCACAAGGGTAG 450 0.36 MRKKVTPSSTFHNPFSSYNYHDDNNNKHTKINTANLQGSTRIYKCDLCSKSFSSGNALGGHKSSHKKQKTHHDDDNEKPEHSCCQVCKKFFSSNKALYGHMRSHKRDGKKVIHPPPTISSSLEHNNDVDEDRFLLRASVLDLSNYFPQG* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2366 149 Gene3D Classic Zinc Finger 42 104 - -
Tpr1g2366 149 SMART c2h2final6 43 65 IPR013087 -
Tpr1g2366 149 SMART c2h2final6 82 104 IPR013087 -
Tpr1g2366 149 SUPERFAMILY beta-beta-alpha zinc fingers 41 104 IPR036236 -
Tpr1g2366 149 ProSitePatterns Zinc finger C2H2 type domain signature. 83 104 IPR013087 -
Tpr1g2366 149 Pfam C2H2-type zinc finger 83 106 - -
Tpr1g2366 149 Pfam C2H2-type zinc finger 43 68 - -
Tpr1g2366 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Tpr1g2366 149 MobiDBLite consensus disorder prediction 58 80 - -
Tpr1g2366 149 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Tpr1g2366 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 109 IPR013087 -
Tpr1g2366 149 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 73 123 IPR044653 GO:0003700
Tpr1g2366 149 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 26 71 IPR044653 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2366 28 104 C2H2 Transcription Factor Family AT3G60580 37.079 6.57e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2366 zf-C2H2_6 9.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2366 - K09228 mtr:MTR_1g052185 98.5969