Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2359 ATGGGGAGAGGAAAGATTGAGATTAAGAAGATTGAGAATTTGAATAGCAGGCAAGTTACTTTTTCTAAGAGACGAAATGGGTTGCTTAAGAAAGCCAAAGAGTTGTCTGTTCTTTGTGATGCAGAGGTTGCTGTTATCATATATTCTGGAACTGGGAAGCTTTATGAGTTTTCAAGCAAAAGCATGGAGCACACCCTTTCAAGGTACGGTACTAGAAGTCTTGATTTGAATAATGGAGCAGAGCAACAACAACAACAACAACCTAGTGGTGATGAGCCTCCAGCAGAAGTTGTGGAGCCTGATACTGCCCTTTTACAAGAAGAAATAACAAAACTTCGTTCATCTTACTTAAGGATGAGTGGTAAGGAGCTTGATGGATTGGGCCTTAAAGAACTGCAGTACCTAGAAAATCAACTGTGTGAAGGGATATGTGCTGTCAAAAACAAGAAGGAACAAGTGTATGTTGAACAACTTAAGAAATCCAGGTTACAGGCGCAAAAGGCTATGATGGAGAATGAAGCGCTTCGCAAACAACTTGAGGAGATAGAAAACAAAAGAAAGGCTGAGTGTCTTGAATTTCATTCATTGGAAAGGACAGTTTCCGTCAACGGTTCAAAACCTCTTTTCAATTTTGCTTCAGAGGATAACGAGATTTCAGATACTTCTTTGCAGTTAGGGTTGTCAACAGATTATGGTTTGAAAAGGAAAGCCTTGAAGATAGAACCTTGCAACGACTCGGGAAGTCAAGTGGCTTCACAGTGA 762 0.4029 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSSKSMEHTLSRYGTRSLDLNNGAEQQQQQQPSGDEPPAEVVEPDTALLQEEITKLRSSYLRMSGKELDGLGLKELQYLENQLCEGICAVKNKKEQVYVEQLKKSRLQAQKAMMENEALRKQLEEIENKRKAECLEFHSLERTVSVNGSKPLFNFASEDNEISDTSLQLGLSTDYGLKRKALKIEPCNDSGSQVASQ* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2359 253 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Tpr1g2359 253 SUPERFAMILY SRF-like 2 72 IPR036879 GO:0003677|GO:0046983
Tpr1g2359 253 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Tpr1g2359 253 PANTHER BNAC04G24260D PROTEIN 1 241 - -
Tpr1g2359 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr1g2359 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr1g2359 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr1g2359 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr1g2359 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr1g2359 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr1g2359 253 Pfam K-box region 101 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr1g2359 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 241 - -
Tpr1g2359 253 Coils Coil 158 199 - -
Tpr1g2359 253 MobiDBLite consensus disorder prediction 79 98 - -
Tpr1g2359 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr1g2359 253 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2359 Tpr-Chr1 26484134 26489519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2359 1 227 MADS-box Gene Family AT5G13790 47.391 9.60e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr1g2359 K-box 7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2359 - - gmx:100792278 356.295