Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2358 ATGGGGAGCAGAGATATTGAGATTGAGAAGACTGACAATTTGATTAGAAGACAAGTTGCCTTCTCCGAGCGACGAAAGAGTTTGTTCAAGAAAGCCAAAGAATTGTCTATTCTTTGTGATGCGGAGGTCGGTGTCATCGTATTTTCTAGCACTGGCAAGCTCTATGAGTTCTCAAGACCAAGCATGGAGCACATCCTTTCAAGGTACGGTGCCGAGCAACAGCAGCCTAATGCTCAGCCTCCACCACAAGTTGTGGAGCTTGATGCTGCCATTCTGCAGGAAGAAATGGCAAAACTGCGCTCAGCTTACGTAAGGATGATCGGTAAGGAGCTCAATGGATTGCAGATTAAAGAACTGAAGGATCTAGAAAATCAACTGAGTGAAGCGATATTAGCCGTCAAAACCAAGAAGGAACAAGTGCTTGTTGATCAACTTGAGAAATCCAGGTTCCAGGAGCAAATGGCTATGGCAGAGATTGAAGATCTGCGTAAACAACTTGAGGAGCTAAAGAATAAAAGAAATTCAGAGTTAGGGTTATCACCAGCTTATGTTCGCAAGAAGAGATCATTGAGGATAAAATCTTCCAATAATTGGGAAGTCATGAGGCTTCACAGTGCATTTTCGCACTGA 630 0.4349 MGSRDIEIEKTDNLIRRQVAFSERRKSLFKKAKELSILCDAEVGVIVFSSTGKLYEFSRPSMEHILSRYGAEQQQPNAQPPPQVVELDAAILQEEMAKLRSAYVRMIGKELNGLQIKELKDLENQLSEAILAVKTKKEQVLVDQLEKSRFQEQMAMAEIEDLRKQLEELKNKRNSELGLSPAYVRKKRSLRIKSSNNWEVMRLHSAFSH* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2358 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 57 IPR002100 GO:0003677|GO:0046983
Tpr1g2358 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr1g2358 209 PANTHER - 1 151 - -
Tpr1g2358 209 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Tpr1g2358 209 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Tpr1g2358 209 Pfam K-box region 86 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr1g2358 209 Coils Coil 152 179 - -
Tpr1g2358 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr1g2358 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr1g2358 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr1g2358 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 151 - -
Tpr1g2358 209 Coils Coil 119 139 - -
Tpr1g2358 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr1g2358 209 ProSiteProfiles K-box domain profile. 82 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2358 Tpr-Chr1 26479717 26482878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2358 1 185 MADS-box Gene Family AT5G13790 44.681 1.95e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr1g2358 K-box 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2358 - - gmx:100792278 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2358 1 26479717 26482878 Tpr1g2358 1 26479717 26482878 ECH