Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2349 ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAATCTTGGTAATGAGACTAATAGCACAAGTGTAGCTGATCAACCTTCCTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTACTAGAAAGAGTCCATCTTGTAGGAGTTTACCATCTCACTGCTTACCATCTCATAGTCCTAGAGGTCGAGATAAAGACGTAGGAGGAGGATATGGTACTAATAACAATCCGAAGACAGGAAAATTTTGTGATTTAGATTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGAGAAGTAGATGAAATGATGCCTTGGTTGGATTATACGATGGATGGTTCTTTTCAAACCGAATATGGTTCTGATTTCTTACATGAACTCACGGAGAATGATGACCTTCCTTCCTCGAATAATTTTACTCTATTGGAGAAAAGGAGTAACGGTAATCAGATGTTTAGGGACTCTCATAAAAATTCTGCAGAACAGATGAATGTTTCTAAGGATTCTTCAGCTGAACAGGTTGAGACTGCAAGACATAAAGTTTGCACAAGTCAGTTATATCCGCCATCATCGAATCAGTGTCAAACATCATTTGAAACTGTTAGATCCGGGGCATCGAATATAACTGAGAATAAAAATGCAAATAATGGTAACCAGGGTGTGCCTTACAGTGAAAATTATCATATTCCATCTTCCTCGACCGATTTTTCTAGCTTAAAAGTGCAGAAGCAAGATCCTATATTGCCTGTCAATGTTTCCAATGTAATGAATTTTTCCCATTTCGCAAGGCCGGCTGCTATTGTGAGAGCTAATCTTCAGAACATCGGCATGAAGTCTGGTTTGAATTCAGCTTCAGCAAGATCAGATAGTATGGGAATTAAGAATAAAGGTGAAGCTTCGACTAGCACCAATCCTGCCGAGTCAACTCTTGTTAATTCAAGCGGTGAATGTTCAAAGGAACTGGAAATGCGTTGTCATAAGGTGGTGGAAAAATCTAAGGCTGATTTGAAACCTTTGCAGCCGAAATCTCTTGAATTGAACACTTTAGCTTCTAAACAATCGGAGCCTGCTTGCAAAGAGAATGGAATTAAGAATGATCAACGTTCCAATCAAGTTCTTGGTGACGGTGGCACTAAAGGACAAACAGGTGCTGAAAAAGGTATGGAGACGGCCGTAGCCTCTTCTTCTATTTGCTCTGGTAATGGTGCAGACAGAGGCTCGGATGATCAGAATCGAGATTTGAAACGGAAAAGTAGAGACACCGAGGACTCTGAATGTCATAGTGAAGATGTGGAGGATGAATCAGTAGGTGTTAAAAAGGGAGGTTCCGGACGAGGAGTTGCAGGTTCCAAAAGAAGTCGCGCTGCTGAAGTGCATAATCTATCCGAAAGGCGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTACAAGAACTCATACCTAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGGTGGAATGCAGCACATGCATGCACCACACATGGCTGCATTTTCACCGATGGGCATTGGCATGCATATGGGATTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGCGGATCTTCTAGATTTCCAATGATGCAGATGCCTCCTCAGATGCAAGGAACTCATATTCCTGTTGCACATATGTCCGGACCTTCTGCTATACACGGGATGGCCAGATCAAATCCTCAAGGGTTTGGACTTCCGGGTCAGGGATTTCCTTTTCCAGGAGGGCCTCTTATGAACTCTGCGTATGGATCCACAGGAACTGTTGAAACTGTGAATCCAGCTTCAGCATCTGGCTCAAGAGATCCAATGCAAAATGTGGACTCACAAATTAAGCAAAACACCGGTGGCCGTGACTCTACAAGCCAGATTCCTAATCAGTCGGCTTTGGTGCATAATGGTGGTCATGACTCAGTGGCTGATGACAGTGGAGCTGCTAATCCTGGCAATATCACTTTGTGA 2121 0.4276 MPLYELYRLARENLGNETNSTSVADQPSSPENDFFELVWESGQISSQGQSSRGTRKSPSCRSLPSHCLPSHSPRGRDKDVGGGYGTNNNPKTGKFCDLDSGLNEIPMSVPSREVDEMMPWLDYTMDGSFQTEYGSDFLHELTENDDLPSSNNFTLLEKRSNGNQMFRDSHKNSAEQMNVSKDSSAEQVETARHKVCTSQLYPPSSNQCQTSFETVRSGASNITENKNANNGNQGVPYSENYHIPSSSTDFSSLKVQKQDPILPVNVSNVMNFSHFARPAAIVRANLQNIGMKSGLNSASARSDSMGIKNKGEASTSTNPAESTLVNSSGECSKELEMRCHKVVEKSKADLKPLQPKSLELNTLASKQSEPACKENGIKNDQRSNQVLGDGGTKGQTGAEKGMETAVASSSICSGNGADRGSDDQNRDLKRKSRDTEDSECHSEDVEDESVGVKKGGSGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPGGMQHMHAPHMAAFSPMGIGMHMGLGMGYGMGMPDMNGGSSRFPMMQMPPQMQGTHIPVAHMSGPSAIHGMARSNPQGFGLPGQGFPFPGGPLMNSAYGSTGTVETVNPASASGSRDPMQNVDSQIKQNTGGRDSTSQIPNQSALVHNGGHDSVADDSGAANPGNITL* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2349 706 MobiDBLite consensus disorder prediction 43 88 - -
Tpr1g2349 706 MobiDBLite consensus disorder prediction 43 66 - -
Tpr1g2349 706 MobiDBLite consensus disorder prediction 297 330 - -
Tpr1g2349 706 SMART finulus 474 523 IPR011598 GO:0046983
Tpr1g2349 706 MobiDBLite consensus disorder prediction 359 391 - -
Tpr1g2349 706 Pfam Helix-loop-helix DNA-binding domain 472 518 IPR011598 GO:0046983
Tpr1g2349 706 PANTHER TRANSCRIPTION FACTOR PIF3 1 677 IPR044273 GO:0003700|GO:0006355
Tpr1g2349 706 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 531 IPR036638 GO:0046983
Tpr1g2349 706 MobiDBLite consensus disorder prediction 420 453 - -
Tpr1g2349 706 MobiDBLite consensus disorder prediction 359 481 - -
Tpr1g2349 706 MobiDBLite consensus disorder prediction 685 706 - -
Tpr1g2349 706 MobiDBLite consensus disorder prediction 402 419 - -
Tpr1g2349 706 Gene3D - 463 526 IPR036638 GO:0046983
Tpr1g2349 706 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 468 517 IPR011598 GO:0046983
Tpr1g2349 706 CDD bHLH_AtPIF_like 468 530 - -
Tpr1g2349 706 PANTHER TRANSCRIPTION FACTOR PIF3 1 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2349 Tpr-Chr1 26347528 26352235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2349 1 579 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.333 3.54e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g2349 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2349 K12126 - gmx:100794974 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2349 1 26347528 26352235 Tpr1g2349 1 26347528 26352235 ECH