Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2345 ATGGTGAACCTTTTCTGGGTTTGCATTGTAATAGGACTTGTTTTCATTAACTGGGTTCATTCTTATCACATCAATGAAACTGAACTCTCTATTTTAGAAGCTCATGAAGCTTCTTTTGCTGTCAATCAGCCTCATATGGTTGGAATCACCATTATTCAATCTGCTGCTGCTAAAGGAGCTGTCTGCTTGGATGGAACATTGCCTGCTTATCATTTTGATCGCGGATATGGATCGGGTGCAAACAGCTGGCTTGTTAATTTAGAGGGAGGTGGATGGTGTAATAATGTTAGAACATGCGTCTATCGCAAGACAACACGGCGTGGATCATCAAAATTCATGGAAAAATCATTACCTTTTACGGGAATATTAAGCAATAATCCTCAAGAGAATCCAGATTTTTTTAACTGGAATAGAGTGAAAATTCGTTACTGTGATGGTGCCTCTTTTACCGGGGATAGCGAAGATAGGGCTGCGCAACTGCAATTCCGAGGACAACGCATTTGGTTGGCTGCAATTGAGGATTTGATGTCAAAAGGAATGCGCTTTGCCAAGCAGGCTCTTCTTTCTGGATGCTCAGCTGGTGGTTTGGCTACTATTTTACACTGCGATGAATTTCGAGGTCTATTCCCGGGGACTACCAATGTGAAGTGTCTCAGTGATGCTGGTTTATTTCTTAATGCTGTCGATGTAGCAGGTGGACATACCCTCAAGAATTTTTTCAACGGTGTTGTAACGCTACAGGGAGCGCAGAAGAATCTTCCACGGAGTTGTACTAATCATCTTGATCCCACTTCGTGCTTCTTTCCTGAGAATTTGATTGCCAGTATCAGAACCCCGCTATTCATTCTTAATACTGCCTATGATTCATGGCAGATTCAGTCAAGCTTAGCTCCTCCATCGGACGATCCACACGGCTATTGGCACGATTGCAGATTAAACCATGCTAAATGTACCGGTTCACAAATCCAATTTCTGCAAGGATTCAGGAATCACATGCTGAATGTTGTTAGAGGCTTCTCAAGATCAAATCAAAATGGATTGTTCATAAATTCATGCTTTGCTCACTGCCAATCTGAGAGGCAAGACACATGGTTTGCTGACAACTCTCCTGTCATAGGGAACAAGGCAATTGCTCTGGCTGTTGGAGACTGGTATTTTAACCGAGCCGCTGTTAAGGACATTGATTGTCCTTACCCTTGTGATAACACATGCCACCATCTAGTTTTCAGATGA 1233 0.4266 MVNLFWVCIVIGLVFINWVHSYHINETELSILEAHEASFAVNQPHMVGITIIQSAAAKGAVCLDGTLPAYHFDRGYGSGANSWLVNLEGGGWCNNVRTCVYRKTTRRGSSKFMEKSLPFTGILSNNPQENPDFFNWNRVKIRYCDGASFTGDSEDRAAQLQFRGQRIWLAAIEDLMSKGMRFAKQALLSGCSAGGLATILHCDEFRGLFPGTTNVKCLSDAGLFLNAVDVAGGHTLKNFFNGVVTLQGAQKNLPRSCTNHLDPTSCFFPENLIASIRTPLFILNTAYDSWQIQSSLAPPSDDPHGYWHDCRLNHAKCTGSQIQFLQGFRNHMLNVVRGFSRSNQNGLFINSCFAHCQSERQDTWFADNSPVIGNKAIALAVGDWYFNRAAVKDIDCPYPCDNTCHHLVFR* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2345 410 Pfam Pectinacetylesterase 42 389 IPR004963 GO:0016787
Tpr1g2345 410 PANTHER PECTIN ACETYLESTERASE 4 409 - -
Tpr1g2345 410 PANTHER NOTUM-RELATED 4 409 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2345 Tpr-Chr1 26299365 26303622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2345 1 410 Carbohydrate Esterase AT1G57590 64.988 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2345 K19882 - gmx:100788448 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2345 1 26299365 26303622 Tpr6g0376 6 3057022 3060434 ECH
Tpr1g2319 1 26063277 26072961 Tpr1g2345 1 26299365 26303622 ECH
Tpr2g3530 2 38515480 38521014 Tpr1g2345 1 26299365 26303622 ECH
Tpr1g2345 1 26299365 26303622 Tpr1g2345 1 26299365 26303622 ECH
Tpr6g0376 6 3057022 3060434 Tpr1g2345 1 26299365 26303622 PCT