Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2337 ATGGCTTCTTCAATTACCGCTTCACTCGGAACAACTTCTTCCATAACCAAAACCCCATCTTCCTTTTCACTTCACAACACTTTCCGTCTCAATACCCTTCTCCGTCTTCGACCTAACCACAAAACTCCCACTGTTTCTTTCGTTATTTCTGCTATTGCCACCCCTAACACTCCCATCCTCACCACTCAAGAAGCTCTTAAAGGTTTGGGTTTCGATGACGCTAATGACCAAATTAGTCGTGTACCTGTTGCCGTTAGCAAGGACGAACTCGACATTTCCCAGCTCGGGTTTCCTTCCCAACTCGTCGACTCGCTCCAGAGGCGTGGAATTACCAGTCTTTTCCCCATTCAGAGAGCTGTGTTGCTGCCTGCAATAGAAGGTAGAGATATCATTGCTCGCGCAAAGACTGGGACTGGAAAGACATTAGCATTTGGAATTCCAATTATCAAGGGTCTCATTGAGAATGAACAAAGCAATACGAGGCGGTTTGGTCGGCTTCCTAAAGTATTAGTTCTTGCACCTACTAGGGAGTTAGCAAAGCAGGTAGAGAAGGAGATAAAAGAATCTGCACCTTATCTAAACACGGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAAAAGAATGCGCTTTCACGTGGTGTTGATGTAGTGGTTGGAACACCTGGGAGACTAATTGACCTGATAAATGGGAGAAGCCTACAACTTAGTGAAATTCAGTATTTGGTACTTGATGAAGCCGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAATCAATTTTAGAAACAATCCCGTCTCAGAGGCAAATAATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAACAATCCAAAGACTATTGATTTGGTCGGTGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTACCAGCCACTTCAATATCAAAGCGGAGAATTCTTTCTGGTCTTATAAGTGCCTATGGAAAGGGTGGGAAGACTATTGTTTTCACAAGGACAAAAAGGGATGCTGATGAAATATCATATTCATTGACAAGTAGTATAGCTTCTAAAGCACTGCATGGTGATATCTCTCAGTATCAGAGAGAGAGAACATTGGATGGTTTTCGGCAAGGGAGATTCACAGTGCTTGTTGCTACTGATGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCTGATGGTCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTGCTGCTGTTGTAATGTTCACCGCTAGCCAGAAAAGAACTGTTATATCCCTTGAGCGTGACGTAGGCTCCAGATTTGAATTTATTAGGCCACCGCCTATGGAAGATTTACCGGAATTACCCACCAGGCAAGTTGTTTCCACACTTGGTAGAGATAGAAGTAATCAGAGAGGTTATAGAACCGGTGGAGATGACTGGTCAAGTGGAGGTAGACGGTCAGGTGGGGATGACTGGTCAAGTGGAGGTAGACGGCCAGGTGGGGATGACTGGTCAACTGAAGGTAGACGATCAAACGGGTATTCGTCATCAAACAGATCTTCATCACCAAACAGGTATTCGTCATCAAACAGATCTTCATCATCAAACGGTTATTCGTCATCAAACAGATCTTCATCATCAAACAGAGGTAATTATCGAGGGCCCTGTTTTAATTGTGGACAATCAGGGCATCGGGCATTGGACTGCCCCAATAAAGAAGACTTATTCTAG 1788 0.439 MASSITASLGTTSSITKTPSSFSLHNTFRLNTLLRLRPNHKTPTVSFVISAIATPNTPILTTQEALKGLGFDDANDQISRVPVAVSKDELDISQLGFPSQLVDSLQRRGITSLFPIQRAVLLPAIEGRDIIARAKTGTGKTLAFGIPIIKGLIENEQSNTRRFGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQKNALSRGVDVVVGTPGRLIDLINGRSLQLSEIQYLVLDEADQMLAVGFEEDVESILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPKTIDLVGDREEKLAEGIKLYAVPATSISKRRILSGLISAYGKGGKTIVFTRTKRDADEISYSLTSSIASKALHGDISQYQRERTLDGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGAAVVMFTASQKRTVISLERDVGSRFEFIRPPPMEDLPELPTRQVVSTLGRDRSNQRGYRTGGDDWSSGGRRSGGDDWSSGGRRPGGDDWSTEGRRSNGYSSSNRSSSPNRYSSSNRSSSSNGYSSSNRSSSSNRGNYRGPCFNCGQSGHRALDCPNKEDLF* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2337 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 451 IPR027417 -
Tpr1g2337 595 Pfam Helicase conserved C-terminal domain 324 431 IPR001650 -
Tpr1g2337 595 SUPERFAMILY Retrovirus zinc finger-like domains 558 593 IPR036875 GO:0003676|GO:0008270
Tpr1g2337 595 MobiDBLite consensus disorder prediction 527 571 - -
Tpr1g2337 595 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 471 IPR001650 -
Tpr1g2337 595 ProSiteProfiles Zinc finger CCHC-type profile. 575 590 IPR001878 GO:0003676|GO:0008270
Tpr1g2337 595 MobiDBLite consensus disorder prediction 481 571 - -
Tpr1g2337 595 Gene3D - 564 593 - -
Tpr1g2337 595 SMART c2hcfinal6 574 590 IPR001878 GO:0003676|GO:0008270
Tpr1g2337 595 Pfam Zinc knuckle 574 590 IPR001878 GO:0003676|GO:0008270
Tpr1g2337 595 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 297 IPR014001 -
Tpr1g2337 595 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 491 - -
Tpr1g2337 595 Pfam DEAD/DEAH box helicase 114 286 IPR011545 GO:0003676|GO:0005524
Tpr1g2337 595 Gene3D - 91 301 IPR027417 -
Tpr1g2337 595 CDD DEADc 101 298 - -
Tpr1g2337 595 CDD SF2_C_DEAD 311 440 - -
Tpr1g2337 595 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 3, CHLOROPLASTIC ISOFORM X1 36 491 - -
Tpr1g2337 595 SMART helicmild6 351 431 IPR001650 -
Tpr1g2337 595 SMART ultradead3 109 314 IPR014001 -
Tpr1g2337 595 Gene3D - 318 488 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2337 Tpr-Chr1 26181213 26185876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2337 116 453 Eukaryotic Initiation Factors Gene Family AT1G72730 36.522 5.85e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2337 - K16911 gmx:100789516 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2337 1 26181213 26185876 Tpr6g0383 6 3138093 3144122 ECH
Tpr1g2337 1 26181213 26185876 Tpr1g2337 1 26181213 26185876 ECH
Tpr6g0383 6 3138093 3144122 Tpr1g2337 1 26181213 26185876 PCT