Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2331 ATGGAAAAGACAATTTTCATTTGTGTAATAGTGCTTGTGGGGTTGTTCACCTCAGAACTAAGGGTAGCTGTTGGGGAGTCCGGGGGTGACCCAACAGTAGCCTCAGCAAATTGGCAGCATGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACTATGGGGGGTGCATGTGGATATGGAAATCTATACAAAGATGGTTATGGAATAAAAACAGCTGCATTGAGTACTGCTTTGTTTAATGATGGTAAATCATGTGGTGGTTGCTATGAGATTGTTTGTGATGCACGTCAAGTTCCCCAATGGTGCCTCAGAGGAACTTCCATAAGAATTACTGCCACTAATTTCTGTCCCCCAAACTTTGATCTCCCTAGTGACGATGGCGGTTGGTGTAATCCTCCTAGACCACATTTTGACTTGTCTCAACCAGCTTTTCAAATGATCGCGAAATATAAAGCTGGAATTGTTCCAATCCTTTACAGAAAAGTTGGGTGCAAAAAAAGTGGAGGCATAAGATTTACAATCAATGGAAGAGACTATTTTGAACTAGTGCTTATAAGCAATGTAGGGGGAGTAGGGGATATTTCCAAAGTTTGGATCAAAGGGTCTAAAATGAAAAAATGGGAATCCATGTCAAGGAATTGGGGTGTTAACTGGCAAAGCTTAAGATATCTAAATGGTCAGAGCCTATCCTTCAGAGTACAACTCAGTAATGGAAAGACTCGTACAGCTATTAATGTGGTACCCTCTAGTTGGAGATTTGGTCAGTCTTTCACCAGCAAGGTTCAGTTCTGA 798 0.4185 MEKTIFICVIVLVGLFTSELRVAVGESGGDPTVASANWQHAHATFYGGSDASGTMGGACGYGNLYKDGYGIKTAALSTALFNDGKSCGGCYEIVCDARQVPQWCLRGTSIRITATNFCPPNFDLPSDDGGWCNPPRPHFDLSQPAFQMIAKYKAGIVPILYRKVGCKKSGGIRFTINGRDYFELVLISNVGGVGDISKVWIKGSKMKKWESMSRNWGVNWQSLRYLNGQSLSFRVQLSNGKTRTAINVVPSSWRFGQSFTSKVQF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2331 265 Pfam Lytic transglycolase 73 161 IPR009009 -
Tpr1g2331 265 SUPERFAMILY PHL pollen allergen 168 261 IPR036749 -
Tpr1g2331 265 Pfam Expansin C-terminal domain 172 250 IPR007117 -
Tpr1g2331 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 171 IPR007112 -
Tpr1g2331 265 Gene3D - 23 167 IPR036908 -
Tpr1g2331 265 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Tpr1g2331 265 PRINTS Expansin signature 97 108 IPR002963 GO:0009664
Tpr1g2331 265 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Tpr1g2331 265 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Tpr1g2331 265 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Tpr1g2331 265 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Tpr1g2331 265 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Tpr1g2331 265 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Tpr1g2331 265 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Tpr1g2331 265 SMART dpbb_1 73 161 IPR007112 -
Tpr1g2331 265 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Tpr1g2331 265 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Tpr1g2331 265 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Tpr1g2331 265 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Tpr1g2331 265 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Tpr1g2331 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Tpr1g2331 265 PANTHER EXPANSIN-A15 9 265 IPR002963 GO:0009664
Tpr1g2331 265 Gene3D - 171 265 IPR036749 -
Tpr1g2331 265 SUPERFAMILY Barwin-like endoglucanases 33 189 IPR036908 -
Tpr1g2331 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Tpr1g2331 265 PANTHER EXPANSIN 9 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2331 Tpr-Chr1 26147671 26148917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2331 35 265 Expansin Gene Family AT4G01630 79.221 4.36e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2331 - - gmx:100783801 457.218