Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2322 ATGGCATCTTCCTTCTCAACACAGTTGGTTCAGAGTCAGAACTTACTTCCTCGTTTTCATGCTGTACAGGGGAAGCCACATGTAGTGTGTAGCAGTGTCAGATCACAGCTTGGATGTAGTAAATTGTCATCAAGCTATCATTACGCAGCGAGGCTTTCTGTGTCACAAAAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTTCTAGTAGTGCTACTGAAAATGTTGAAGAGCTGCAAGCCAAAGTAACAAACAAGGTTTTCTTTGATATAGAAATTGGGAATAAACCTGCTGGAAGAATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGCTGACAATTTCCGAGCTTTGGCCACTGGAGAGAAAGGATATGGCTACAAAGGATCCTTCTTCCATCGTATAATCCCAAAATTCATGATTCAGGGAGGCGACTTCACTGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTGATTTGAAGCATATTGGTCCCGGAGTTTTGAGCATGGCGAATGCTGGTCCTAATAGCAATGGCAGTCAATTTTTTATTTGCACTGTACCGACTCCATGGTTAGACAATAAGCATGTTGTGTTTGGACATGTCATTGAGGGAATGGATATTGTGAAGACACTTGAATCACAGGAGGTAAGCAGCTACAACAATTATCCCGAGAAACCATGCAAAATCGCTAATTCTGGAGAACTGCCTATAGATGGTTGA 762 0.4108 MASSFSTQLVQSQNLLPRFHAVQGKPHVVCSSVRSQLGCSKLSSSYHYAARLSVSQKSKAKSITSRRITCSSSATENVEELQAKVTNKVFFDIEIGNKPAGRIVIGLFGDVVPKTADNFRALATGEKGYGYKGSFFHRIIPKFMIQGGDFTEGNGTGGVSIYGGKFEDENFDLKHIGPGVLSMANAGPNSNGSQFFICTVPTPWLDNKHVVFGHVIEGMDIVKTLESQEVSSYNNYPEKPCKIANSGELPIDG* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2322 253 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 90 248 IPR002130 GO:0000413|GO:0003755
Tpr1g2322 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 37 252 - -
Tpr1g2322 253 SUPERFAMILY Cyclophilin-like 81 249 IPR029000 -
Tpr1g2322 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 37 252 - -
Tpr1g2322 253 CDD cyclophilin_ABH_like 88 247 - -
Tpr1g2322 253 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 91 246 IPR002130 GO:0000413|GO:0003755
Tpr1g2322 253 Gene3D - 62 251 IPR029000 -
Tpr1g2322 253 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 131 148 IPR020892 GO:0003755|GO:0006457
Tpr1g2322 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Tpr1g2322 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 148 IPR002130 GO:0000413|GO:0003755
Tpr1g2322 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 194 IPR002130 GO:0000413|GO:0003755
Tpr1g2322 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 194 206 IPR002130 GO:0000413|GO:0003755
Tpr1g2322 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 207 222 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2322 Tpr-Chr1 26088757 26091516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2322 101 243 U-box Gene Family AT5G67530 45.833 4.17e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2322 K03768 - gmx:100526955 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2322 1 26088757 26091516 Tpr1g2322 1 26088757 26091516 ECH