Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2319 ATGAAGTTGCTGATTTTGTTTGCAGCTCAATTTACATTCTTAGTTTCTGGGTTTATCTCCTCTGAATCTGACTCACTATTTTCTTTCTCACTTAATGATAATCAATTGCAACAACCTCTTATGGTTAATCTCACTCTCATTCAAGGAGCTGATTCCAAAGGAGCTGTCTGTTTGGATGGAACATTGCCTGGTTACCATTTGGATCGTGGATTTGGATCTGGTTCAACTAGTTGGCTTATTCATCTGGAGGGAGGAGGATGGTGTAACACTATTAGAAACTGTGTCTACAGAAAAAAGACTCCTCGTGGTTCCTCGATATACATGGAAAATCAAATACCATTCACAGGAATATTGAGCAATAAACCTGAAGAAAACCCTGATTTCTTTAACTGGAATAGAGTCAAATTAAGGTACTGTGATGGAGCTTCTTTTAGTGGAGATAGTGAAAATGAGGCTGCGGGGCTTCAATTCCGTGGACAAAGAATATGGCTAGCTGCAATGGAGGAATTAATGTCTCAAGGAATGCAGGATGCAGAACAGGCCCTTCTCTCCGGATGCTCCGCGGGTGGTCTAGCATCCATAATACATTGTGATGAGTTCCAGAGCTTGTTACCAAAACCTTCCAAAGTGAAGTGTTTTAGTGATGCAGGATTTTTTCTTGATGCAATTGATGTATCTGGAGGACGGTCACTGAGGGATCTATTCGGAGGCGTCGTTGAGTTACAGGAAGTCCACAAAAATCTGCCGAAAAATTGTCTAAGTCAACTGGACCCGACTTCGTGCTTCTTTCCTCAAAATTTGGTAGAACACGTTGAGACACCACTGTTTCTACTCAACGCGGCTTATGATGTGTGGCAGGTCCGATCGAGTTTAGCTCCGACCACAGCTGATCCCCTTGGCTCTTGGAATGACTGCAAATCAAACCATGCAGAGTGTAACTCATCTCAAATTCAGTTCCTCCAAGACTTCAGAAATCAAATGCTTGACGACGTGAAAGACTTCTCAAAGTCGTCTCAAACTGGACTATTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGACATGAGTTATGGTTCGCCGATAACTCTCCTCTTATCGATGACAAGCCAATTGCAGTAGCAGTTGGAGACTGGTTTTTCGATCGAGAAGTTGTCAAAGCTATTGACTGTCCTTACCCTTGTGACAACAGCTGCCATAATCTGGTGTTTAAATGA 1218 0.4236 MKLLILFAAQFTFLVSGFISSESDSLFSFSLNDNQLQQPLMVNLTLIQGADSKGAVCLDGTLPGYHLDRGFGSGSTSWLIHLEGGGWCNTIRNCVYRKKTPRGSSIYMENQIPFTGILSNKPEENPDFFNWNRVKLRYCDGASFSGDSENEAAGLQFRGQRIWLAAMEELMSQGMQDAEQALLSGCSAGGLASIIHCDEFQSLLPKPSKVKCFSDAGFFLDAIDVSGGRSLRDLFGGVVELQEVHKNLPKNCLSQLDPTSCFFPQNLVEHVETPLFLLNAAYDVWQVRSSLAPTTADPLGSWNDCKSNHAECNSSQIQFLQDFRNQMLDDVKDFSKSSQTGLFINSCFAHCQSERHELWFADNSPLIDDKPIAVAVGDWFFDREVVKAIDCPYPCDNSCHNLVFK* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2319 405 Pfam Pectinacetylesterase 37 385 IPR004963 GO:0016787
Tpr1g2319 405 PANTHER PECTIN ACETYLESTERASE 1 404 - -
Tpr1g2319 405 PANTHER NOTUM-RELATED 1 404 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2319 Tpr-Chr1 26063277 26072961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2319 41 405 Carbohydrate Esterase AT1G57590 70.137 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2319 K19882 - gmx:100786972 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2319 1 26063277 26072961 Tpr1g2345 1 26299365 26303622 ECH
Tpr1g2319 1 26063277 26072961 Tpr6g0376 6 3057022 3060434 ECH
Tpr1g2319 1 26063277 26072961 Tpr1g2319 1 26063277 26072961 ECH
Tpr6g0396 6 3237909 3246130 Tpr1g2319 1 26063277 26072961 PCT