Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2318 ATGGGAAGACACTCATGTTGTTACAAGCAAAAGCTTAGGAAGGGACTATGGTCACCAGAAGAAGATGAAAAACTTCTAAGACATATAACAAAGTATGGACATGGATGTTGGAGTTCAGTACCTAAGCAAGCAGGTTTGCAAAGATGTGGTAAGAGTTGCAGACTTAGATGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTTTCACAAGATGAAGAAGATCTCATTGTTGAACTTCATGCAGTATTAGGAAATAGATGGTCTCAAATTGCGGCGCAATTACCGGGGAGGACCGACAATGAAATAAAGAATCTATGGAATTCTTGTTTGAAGAAGAAACTGAGGCAAAAAGGTATAGATCCTGTAACTCATAAACCATTATCTCATATTGAGAATAATGGAGAAGAAAATTCAAATGCAAAGAGTCAAGAAAAAGCAGCAGAGTTATTATTATCATCCAATGAATTGAATCTTCTGAAATCAGAAAGTTCAAAATCAGATGCAGCTTCTAATTATGAGCAAAGAACATCACCAAAAGAATATGCATTAGAAATTGAAGGTTCTTGCAACAAAGATTTTTTCATTGACAGGTTCATTAGTACTACTCATCATCATCACAATCACAATACAAATTCTCAAGATTTGATGGGAAATTTTCCAATTCAGATGAGTTATTCAAACACTGAAAATGATTGTTTACCAAATGATTCAAACAATCATAATCATAATTGGTTTAACCAAACTGGAAAAACATTTGATATGAATTCTAATGAATTTCATTTCAATTCCAACACAACAACTATGTTTCTTCCAAATTCTTTTGATATTCACTCTGACAATGTTTCTACTGAGATGAGAAGTAACATCAACTTGCATAGTAATAATTTTTCTTCTTGGGGAGGAATGATGGAAAATCATACAGAAGAAGCTAATAGTAGTAATTATTTTCATAATCCAATTTTAATGTTGGCTTCTGAATCATTATGCAATGAGATAAAGCCATCAATGAATTTAGCAGTTGATAATACTTTTGGAGCTATTTTGCCAAATGCAAAGCAAGAACAAGAAGAACAGTTACAAAGTTCTAATATATTTTCTAAGGATATTCAGAAACTAAGAGAAGCTTTTGGAGATATGTAA 1146 0.3229 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQDEEDLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSHIENNGEENSNAKSQEKAAELLLSSNELNLLKSESSKSDAASNYEQRTSPKEYALEIEGSCNKDFFIDRFISTTHHHHNHNTNSQDLMGNFPIQMSYSNTENDCLPNDSNNHNHNWFNQTGKTFDMNSNEFHFNSNTTTMFLPNSFDIHSDNVSTEMRSNINLHSNNFSSWGGMMENHTEEANSSNYFHNPILMLASESLCNEIKPSMNLAVDNTFGAILPNAKQEQEEQLQSSNIFSKDIQKLREAFGDM* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2318 381 MobiDBLite consensus disorder prediction 123 146 - -
Tpr1g2318 381 Gene3D - 69 150 - -
Tpr1g2318 381 PANTHER MYB DOMAIN PROTEIN 55 1 341 - -
Tpr1g2318 381 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr1g2318 381 CDD SANT 17 61 IPR001005 -
Tpr1g2318 381 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr1g2318 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr1g2318 381 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr1g2318 381 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tpr1g2318 381 Gene3D - 11 67 - -
Tpr1g2318 381 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tpr1g2318 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr1g2318 381 SMART sant 13 63 IPR001005 -
Tpr1g2318 381 SMART sant 66 114 IPR001005 -
Tpr1g2318 381 PANTHER MYB DOMAIN PROTEIN 55 1 341 - -
Tpr1g2318 381 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2318 Tpr-Chr1 26039337 26041270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2318 1 153 MYB Transcription Factor Family AT4G01680 83.660 1.47e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g2318 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2318 K09422 - gmx:100815881 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2318 1 26039337 26041270 Tpr1g2347 1 26315553 26317525 ECH
Tpr1g2318 1 26039337 26041270 Tpr6g0375 6 3048848 3050654 ECH
Tpr1g2318 1 26039337 26041270 Tpr1g2318 1 26039337 26041270 ECH
Tpr6g0398 6 3275184 3277163 Tpr1g2318 1 26039337 26041270 PCT