Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2312 ATGGGCAAAGGTTCTGCTTCTTCATCCTCATCTTCCAATGGTAGAAGAAAGAAACATAATACCTCCAATGTTTCATCATCCATCACACATCAAAATTCTGACCAACATCTTTGTCCTGATCTTAACCTTGGTTTGAGCATTTCTCATCAATATGTTCATTCTTCCAATTCAAGGGGACATTGGCAACCAATGCAGCAACAAGCTTATGAAGTGAATGATTGCAATGATTACAACAGTTTCTTTGTGAAGGTTTATATGGAAGGCATTCCAATTGGGAGAAAACTCAATTTATTAGCTCATGGTTGTTATGAAGAGCTAGTAAATACTCTTGAACAAATGTTTGACACTACTATTCTATGGGGAACTGAGATGGATGGAATGCAATCAGAGAGATGTCATGTGCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCATCGGTGAAGAGGTTGAAGATCACAAGAGTTGATGCTTTCGGATTTTGA 519 0.3796 MGKGSASSSSSSNGRRKKHNTSNVSSSITHQNSDQHLCPDLNLGLSISHQYVHSSNSRGHWQPMQQQAYEVNDCNDYNSFFVKVYMEGIPIGRKLNLLAHGCYEELVNTLEQMFDTTILWGTEMDGMQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2312 172 ProSiteProfiles PB1 domain profile. 79 169 IPR000270 GO:0005515
Tpr1g2312 172 MobiDBLite consensus disorder prediction 1 35 - -
Tpr1g2312 172 PANTHER AUXIN-INDUCED PROTEIN 2 171 - -
Tpr1g2312 172 Pfam AUX/IAA family 66 166 IPR033389 -
Tpr1g2312 172 Gene3D - 73 171 - -
Tpr1g2312 172 SUPERFAMILY CAD & PB1 domains 75 164 - -
Tpr1g2312 172 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 171 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2312 Tpr-Chr1 25974423 25975736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2312 63 164 B3 DNA Binding Superfamily AT1G59750 32.353 3.72e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Tpr1g2312 AUX_IAA 2.9e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2312 K14484 - gmx:100781660 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2312 1 25974423 25975736 Tpr1g2312 1 25974423 25975736 ECH
Tpr6g0401 6 3297658 3298718 Tpr1g2312 1 25974423 25975736 PCT