Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2306 ATGGATGTGGAAACTGAGAAGGATGTTGGTGTTGTTGATAAGAAAAGGAATAATCATGATGATGAAGCAACAACATCAGAGAAGAATGGCACAGAAACAAGTACAAACGGTGAAAAGGACAAGACAAAAGAGAAACAAGAGACAGTTCCATTTCATAAATTGTTCACTTTTGCAGATTCTACTGACATTTTATTAATGGTTGTTGGAACAATCGGTGCTATTGGAAACGGTTTGGGTTTACCTCTTATGACATTGTTGTTCGGTCAAATGATTAATAGTTTTGGTAGTAATCAAAGTAACACCGATGATGTTGTTCAACAAGTGTCCAAGGTGTCTCTGAAATTTGTATATTTGGCAGTAGGATGTGGGGTGTCAGCATTTCTCCAGGTGAGTTGTTGGATGGTCACAGGAGAAAGACAAGCTGCAAGAATAAGAGGATTGTATTTGAAAACAATATTAAGACAAGATGTTACTTTCTTTGATAAAGAAACAAACACAGGAGAAGTTGTTGGGAGAATGTCTGGTGACACTGTTCTAATTCAAGATGCCATGGGTGAGAAGGTTGGGAAATTTTTGCAGCTAATAGCAACATTCATTGGGGGTTTTGTGATAGCATTTACCAAAGGGTGGCTTCTTACTGTTGTAATGATGTCAACTCTTCCACTTCTTGTTGTGTCAGGTGCTGCCATGGCTCTTATCATAGGCAGAATGGCTTCTAAAGGTCAAACTGCTTATGCAAAAGCTGCACATGTTGTTGAACAGACAATTGGCTCAATAAGAACCGTTGCATCCTTTACCGGAGAAAAGCAAGCGGTGTCTAGTTATAGCAAATTTCTTGTAGATGCTTACAAAGCAGGAGTTTTTGAAGGTTCTATAGCTGGAGTAGGACTAGGCACAGTCATGTTTGTTATTTTCTGTGGTTATGCTTTAGCTGTATGGTTTGGTGCAAAGATGATAATGGAAAAAGGATATAATGGCGGTACCGTTATTAATGTGATCATCGCCGTGTTAACTGCTTCCATGTCTCTTGGCCAGGCATCACCTAGTCTGAGTGCTTTTGCGGCGGGTCAGGCGGCAGCCTACAAAATGTTCGAGACAATTAACAGGAAGCCGGAGATAGATACTTATGATCCAAATGGAAAAATATTAGAAGACATTCAAGGTGAAATAGAGTTGAAGGAAGTTTATTTCAGTTATCCTGCAAGACCTGAGGAGCTTATATTCAATGGATTCTCTCTTCATATACCGAGCGGAACAACCGCGGCATTAGTTGGACAAAGTGGAAGCGGAAAGTCCACAGTTATTAGTTTGGTAGAAAGATTCTACGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAACATGAAAGAATTTCAGCTCAGGTGGATTCGAGGGAAAATTGGTCTTGTTAGCCAGGAGCCGGTGTTGTTTGCATCGAGCATTAAGGATAACATTGCATATGGTAAAGATGGAGCAACAATCGAAGAGATAAGATCTGCGTCCGAACTTGCAAATGCTGCCAAATTCATTGATAAACTTCCACAGGGTTTGGACACAATGGTTGGTGAACATGGAACTCAGCTGTCTGGTGGACAGAAGCAGCGCATTGCCATCGCAAGAGCAATCCTTAAGAATCCAAGAATTTTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGGGTGGTGCAAGAGGCTCTAGATAGGATCATGGTCAACCGAACCACGGTTGTTGTTGCGCATCGTTTGAGCACAGTGAGGAATGCTGACATGATTGCTGTAATCCATAGAGGGAAAATGGTTGAGAAAGGAACTCACTCAGAATTACTCAAGGATCCTGAAGGAGCTTATTCACAACTCGTACGCTTACAAGAAGTAAACAAGGAATCAGAAGAAACTACAGATAGCAATGGCAAGAGAGAACTTTCTGCAGAATCCTTTAGACAATCAAGTCAAAGGAAGTCGCTTCAAAGATCTATTAGTAAGGGATCGTCTATAGGGAATAGTAGTCGCCATTCGTTTTCGGTTTCATTCGGTTTACCAACGGCAATTAACGTTGCTGATCCTGATGACCTTGAAAAATTACCGACCAAAGAAAAAGGACCAGAAGTTCCCCTAAGCCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTTTTGCTTTTGGGATGTTTAGCTGCCATAGGAAATGGTGTCATATTTCCAATATTCGGTATTTTGATCTCTAGTGTCATCAAAACATTTTACGAACCGTTTGATGAGATGAAAAAGGACTCCAAGTTTTGGGCAATAATGTTTTCACTCCTTGGTCTTGCATCATTGGTGGTGATTCCGGCGCGATCTTATTTTTTCTCTGTGGCCGGATGTAAGTTAATACAACGTATCAGGCTATTATGTTTTGAGAAGGTGGTGAGCATGGAGGTTAGCTGGTTTGATGAGCCTGAAAACTCGAGTGGCGCAATTGGTGCAAGGCTTTCAGCAGATGCTGCTTCTGTTCGCGCTCTTGTTGGCGATGCACTTGGACTGGTGGTTCAGAATTTGGCAACTGCATTGGCTGGTTTGATTATTGCTTTCGTTGCAAGCTGGCAGCTCGCGTTGATTATTCTTGTCTTGATTCCTCTCATTGGATTAAATGGATACGTTCAAATGAAATTCATGAAGGGATTCAGCGCAGATGCAAAGATGATGTACGAGGAGGCTAGCCAAGTTGCAAATGATGCTGTTGGAAGCATAAGAACTGTTGCATCTTTCTGTGCTGAAGATAAGGTTATGGAACTATATAGGAAGAAATGTGAAGGTCCGATGAAAACAGGCATAAGGCAAGGAATAATCAGTGGATCGGGATTCGGTGTTTCATTTTTCTTATTGTTTTGTGTCTATGCAACAAGTTTCTACGCTGGAGCTAGACTTGTGAAATCCGGGGATACAACATTTTCAGAAGTTTTCCGGGTTTTCTTTGCGTTAACTATGGCAGCTATTGGTATTTCTCAGTCAAGTTCCTTTGCTCCTGACTCAAGTAAAGCAAAGTCAGCTGCTGCTTCTATATTCGGAATGCTTGATAAGAAATCAAAGATCGATCCAACCGATGAATCCGGCACCACTCTAGATAGCGTTAAAGGCGAAATTGAGCTTCGTCATGTTAGTTTCAAGTATCCATCTCGGCCAGATATTCAGATTTTCCGAGACCTCAACTTGAACATCCATTCTGGCAAGACAGTAGCACTTGTCGGTGAAAGTGGAAGCGGAAAATCAACTGTGATTGCTTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGAAATCACACTTGATGGAATTGAAATTCGTCAGTTACAGCTCAAGTGGTTAAGGCAACAAATGGGACTTGTGAGCCAAGAACCAGTATTATTCAATGACACCATCTGCGCCAATATTGCCTACGGAAAAGATGGCAATGCAACTGAGGCAGAAATCATAGCTGCTTCAGAATTGGCCAATGCTCATAGATTCATCAGTGGCTTACAACAGGGTTATGATACAATAGTGGGAGAGAGAGGAACTCAATTATCAGGTGGACAAAAACAAAGGGTAGCCATTGCACGTGCAATAATCAAAAGTCCAAAGATTTTGTTACTTGATGAAGCCACAAGTGCATTAGATGCTGAGTCAGAAAGAGTTGTTCAAGATGCATTAGACAAAGTCATGGTGAATAGAACCACTGTGGTTGTGGCACATCGTTTATCAACAATTAAAAATGCTGATGTTATTGCTGTTGTTAAAAATGGAGTTATAGTTGAAAAAGGAAGACATGAAACACTTATTAATGTTAAGGATGGATTTTATGCTTCCTTAGTTCAACTTCATACAAGTGCTAAAACAGTTTGA 3876 0.41 MDVETEKDVGVVDKKRNNHDDEATTSEKNGTETSTNGEKDKTKEKQETVPFHKLFTFADSTDILLMVVGTIGAIGNGLGLPLMTLLFGQMINSFGSNQSNTDDVVQQVSKVSLKFVYLAVGCGVSAFLQVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFTKGWLLTVVMMSTLPLLVVSGAAMALIIGRMASKGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKAGVFEGSIAGVGLGTVMFVIFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSLSAFAAGQAAAYKMFETINRKPEIDTYDPNGKILEDIQGEIELKEVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINMKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLVRLQEVNKESEETTDSNGKRELSAESFRQSSQRKSLQRSISKGSSIGNSSRHSFSVSFGLPTAINVADPDDLEKLPTKEKGPEVPLSRLASLNKPEIPVLLLGCLAAIGNGVIFPIFGILISSVIKTFYEPFDEMKKDSKFWAIMFSLLGLASLVVIPARSYFFSVAGCKLIQRIRLLCFEKVVSMEVSWFDEPENSSGAIGARLSADAASVRALVGDALGLVVQNLATALAGLIIAFVASWQLALIILVLIPLIGLNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGIISGSGFGVSFFLLFCVYATSFYAGARLVKSGDTTFSEVFRVFFALTMAAIGISQSSSFAPDSSKAKSAAASIFGMLDKKSKIDPTDESGTTLDSVKGEIELRHVSFKYPSRPDIQIFRDLNLNIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIRQLQLKWLRQQMGLVSQEPVLFNDTICANIAYGKDGNATEAEIIAASELANAHRFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINVKDGFYASLVQLHTSAKTV* 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2306 1291 MobiDBLite consensus disorder prediction 629 671 - -
Tpr1g2306 1291 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 18 1287 - -
Tpr1g2306 1291 MobiDBLite consensus disorder prediction 629 646 - -
Tpr1g2306 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 725 1011 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr1g2306 1291 ProSitePatterns ABC transporters family signature. 1186 1200 IPR017871 GO:0005524
Tpr1g2306 1291 SUPERFAMILY ABC transporter transmembrane region 712 1030 IPR036640 GO:0005524|GO:0016021
Tpr1g2306 1291 CDD ABC_MTABC3_MDL1_MDL2 390 628 - -
Tpr1g2306 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 628 IPR027417 -
Tpr1g2306 1291 PANTHER - 18 1287 - -
Tpr1g2306 1291 Gene3D - 1036 1286 IPR027417 -
Tpr1g2306 1291 Gene3D - 380 629 IPR027417 -
Tpr1g2306 1291 CDD ABC_MTABC3_MDL1_MDL2 1046 1284 - -
Tpr1g2306 1291 Gene3D ABC transporter type 1, transmembrane domain 1013 1289 IPR036640 GO:0005524|GO:0016021
Tpr1g2306 1291 Gene3D ABC transporter type 1, transmembrane domain 53 636 IPR036640 GO:0005524|GO:0016021
Tpr1g2306 1291 Gene3D ABC transporter type 1, transmembrane domain 704 1012 IPR036640 GO:0005524|GO:0016021
Tpr1g2306 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 390 626 IPR003439 GO:0005524
Tpr1g2306 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 67 355 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr1g2306 1291 CDD ABC_6TM_Pgp_ABCB1_D2_like 714 1029 - -
Tpr1g2306 1291 Pfam ABC transporter transmembrane region 67 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr1g2306 1291 Pfam ABC transporter transmembrane region 724 996 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr1g2306 1291 ProSitePatterns ABC transporters family signature. 529 543 IPR017871 GO:0005524
Tpr1g2306 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1046 1283 IPR003439 GO:0005524
Tpr1g2306 1291 MobiDBLite consensus disorder prediction 1 45 - -
Tpr1g2306 1291 Pfam ABC transporter 409 557 IPR003439 GO:0005524
Tpr1g2306 1291 Pfam ABC transporter 1065 1214 IPR003439 GO:0005524
Tpr1g2306 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1036 1284 IPR027417 -
Tpr1g2306 1291 CDD ABC_6TM_Pgp_ABCB1_D1_like 66 351 - -
Tpr1g2306 1291 SMART AAA_5 1073 1266 IPR003593 -
Tpr1g2306 1291 SMART AAA_5 417 603 IPR003593 -
Tpr1g2306 1291 MobiDBLite consensus disorder prediction 647 671 - -
Tpr1g2306 1291 SUPERFAMILY ABC transporter transmembrane region 52 374 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2306 Tpr-Chr1 25920357 25927667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2306 39 1290 Calmodulin-binding Proteins AT2G36910 45.705 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2306 K05658 - gmx:100777909 2141.7