Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2304 ATGGAAAGTAAAGTACTTGTTTCAGCTGTTTCTCTTATTCTTGTAGTAGGTGTTGCCTTAGGTGTTGTTGCTGTTGTTCGAACGTCGAACAAACCCGGTGAGGATGGTTCTCAATTGAATGCACATACTAAAGCTGTTGAAACTGTATGTCAAGGTAGTGATGATAGGAAATTTTGTACTGACACTCTTAATCCTGTTAATACCTCGGACCCTAATGATTATATAAAAGCCGTGGTTAAAACATCGATGGAAAGTGTCATCAAAGCCTTCAACATGAGCGATACGCTAGCAGTTGAAAATGACAAAGGTAACTCGACTGTAAAAATGGCGCTCGATGATTGTAAAGATTTGTTACAATCCGCGATACAAGAATTACAAGCCTCCAATGTTTTAATTCATGATAACAATTCTCAAAATGTTACTCAACGTACCGCGGAGCTTAAAAATTGGTTAGGTGCCGTTGTTGCTTACCAACAATCGTGTCTTGACGGTTTTAATACCGATGGTGAAAAGCAGGTTCAGTCGCAGTTGCAGACAGGTAGTTTGGATGATGTACAAAAACTTACGGCATTAGCACTTGATGTTGTGTCTGCGGTTGCAAAAGTACTTGATGCATTTAATTTGGATTTGGATGTGAAAACTTCGTCTCGTAGGCTTTTTGAAGTCGAGGATGAAGACGGAGAGGGTTACCCAGAATGGATGGCCGCTGCAGATCGTAGGCTAATGGCTGATATGAGTACCGGAATGTCTGTTACGCCTAATGCAGTTGTTGCCAAAGATGGTAGTGGTCAATTTAAAACGGTTCTTGATGCTATTAATTCTTATCCGAAAAATCATGTAGGTAGATTTGTTATCTACGTGAAGGCTGGTGTCTATGATGAATATATTCTGGTTGACAAGAAAAAGCCGAATCTTTTATTATATGGCGACGGCCCTACAAAAACCATTATCACCGGTAGTAAGAATTTTGTAGATGGTTGGAAGACTATGCGGACGGCTACATTCTCTACTGTTGCGGATGATTTCATGGCAAAGGCAATGGCATTCGAGAACACAGCAGGAGCAAGCAAACATCAAGCAGTAGCACTTCGTGTACAAGGTGACCGATCAGCTTTCTTTGACTGCGCCATACGAGGTTACCAAGACACATTATATGCACACGCCCACCGTCAATTCTACAGAAACTGCGAAATTTCAGGCACAGTTGATTTCATTTTCGGCTACTCAGCAACAGTAATACAAAACTCCAAAATAATAATTCGAAAACCAGAAGCAAATCAACAAAACATAGTAGTAGCAGATGGAACAGATCAAAAGAACATGCCAACAGGAGTAGTACTTCAGAATTGTGAGATTATGCCAGAAGCAGAATTACAAGCTGATAGATTAACAGTTAGATCATATTTAGCGAGACCATGGAAAGCGTATTCGAGAGCAATATTTATGGAAAATACTATAGGTGATTTAATTCAACCAGATGGATATCTTCCTTGGTCAGGGACTCAATTTCTTGATACATGTTATTTTGCTGAGTATGCTAATACTGGACCTGGTTCAGATGTTAAAGCAAGAGTTAAATGGGGAAAAGGTGTTCTTACAAAAGCTGATGCAATGAAATATACTGCTAATGAATGGATTCAAGCTGGTATGTGGTTACCTGCTACTGGTATACCCTTTGAACTTGGATTCACTAAAGCTTGA 1701 0.398 MESKVLVSAVSLILVVGVALGVVAVVRTSNKPGEDGSQLNAHTKAVETVCQGSDDRKFCTDTLNPVNTSDPNDYIKAVVKTSMESVIKAFNMSDTLAVENDKGNSTVKMALDDCKDLLQSAIQELQASNVLIHDNNSQNVTQRTAELKNWLGAVVAYQQSCLDGFNTDGEKQVQSQLQTGSLDDVQKLTALALDVVSAVAKVLDAFNLDLDVKTSSRRLFEVEDEDGEGYPEWMAAADRRLMADMSTGMSVTPNAVVAKDGSGQFKTVLDAINSYPKNHVGRFVIYVKAGVYDEYILVDKKKPNLLLYGDGPTKTIITGSKNFVDGWKTMRTATFSTVADDFMAKAMAFENTAGASKHQAVALRVQGDRSAFFDCAIRGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSATVIQNSKIIIRKPEANQQNIVVADGTDQKNMPTGVVLQNCEIMPEAELQADRLTVRSYLARPWKAYSRAIFMENTIGDLIQPDGYLPWSGTQFLDTCYFAEYANTGPGSDVKARVKWGKGVLTKADAMKYTANEWIQAGMWLPATGIPFELGFTKA* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2304 566 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Tpr1g2304 566 Gene3D - 248 563 IPR012334 -
Tpr1g2304 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 197 IPR035513 -
Tpr1g2304 566 Pfam Plant invertase/pectin methylesterase inhibitor 45 194 IPR006501 GO:0004857
Tpr1g2304 566 PANTHER PECTINESTERASE 6 564 - -
Tpr1g2304 566 SUPERFAMILY Pectin lyase-like 251 561 IPR011050 -
Tpr1g2304 566 CDD PMEI-like_3 48 201 - -
Tpr1g2304 566 PANTHER PECTINESTERASE 6 564 - -
Tpr1g2304 566 Pfam Pectinesterase 254 548 IPR000070 GO:0030599|GO:0042545
Tpr1g2304 566 SMART PMEI_2 41 195 IPR006501 GO:0004857
Tpr1g2304 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 200 IPR035513 -
Tpr1g2304 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 22 193 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2304 Tpr-Chr1 25901828 25903841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2304 4 563 Carbohydrate Esterase AT3G62170 38.954 1.71e-141 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2304 K01051 - gmx:100820142 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2304 1 25901828 25903841 Tpr6g0413 6 3386979 3389203 PCT