Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2303 ATGAGTGGAAAAGTAATAGTTTCTGGTGTATCCATCATTCTTGTGGTGGGTGTTGCCATCGGTGTCGTGTGCGTTGTCAACAAAACTGGTAATGATCCTGCATTAGCAGCACATCAAAAAAATGTGCAATCCATTTGTTCTGCAACTGAAGATCAAAAACTTTGTCAAGACACTCTTGGCGCCGCGAAACCAACCAATTCCTCTGATCCAACAGCTTATTTAGCAGCTGCGGTTGAAGCAAGTGCAAAAAGCGTTATCCTTGCTTTGAATATGAGTGACCAGTTAAAAGTTGAACATGACAACGGCGAACCTGGTATCAAAATGGCTCTTGACGATTGCAAAGACTTGATGCAATTCGCTCTTGATAGTCTCGAGTCATCGGCTAATTTGGTTCGTGATAACAATGTTCAAGCGATTCATGACCAAACACCTGACTTTAGGAACTGGTTGAGTGCTGTTATCTCGTACCAAGAATCATGCACGGAAGGGTTCAATAATGGGACAAGCGGAGAGGAACAGGTAAAGAAACAGTTGCAAACAGAAAGTTTGGATAAGATGGAGAAACTAACTGGAATTACACTTGACATTGTATCAAGTATGGTTCATCTCCTTCAGAGTTTCGACTTGAAGCTAGATTTGAATCCATCTTCTCGTCGTCTTCTGGAGGTTAATGAGCTTGACAATGAAGGGTTGCCAAAGTGGTTCTCGGCTGCGGATCGTAAGCTATTGGCTAAGGTAGGTGGTGGTGGTGCTGCTGCTGCTGGAGGTGGCGGTGGAGCTCCTGCACCAAATGCAGTAGTTGCTAAAGATGGCAGTGGTCAATTTAAAACAGTTAAAGAGGCTATTGACTCATATCCTAAGGGATTCCAAGGCAGATTCATTATCTATGTTAAGGCCGGAGTCTATGACGAATACATCACCGTTCCCAAAACAGCAATAAATATTCTTATGTATGGCGACGGTCCTACAAAGAGTATTATCACCGGTCACAAAAACTTTGTCGACGGCGTCAAAACAATGCAAACTGCCACTTTTGCAAATGTTGCACCTGGATTCATTGCAAAGTCAATAGCATTCGAGAACACAGCTGGATGGGAAAAACATCAAGCAGTGGCATTTAGAAACCAAGGAGATATGTCAGCATTCTTCGACTGCGCCATGCATGGCTACCAAGACACATTATACGTTCAAGCCAATCGTCAATTCTACCGCAACTGTGAAATATCCGGTACCATAGACTTCATATTCGGCGCATCTCCAACCCTAATCCAAAACTCTAAAATCATCGTGCGAAAGCCAGGACCAAGCCAATTCAACACAGTAACCGCAGACGGTACAAAACAACGAAACATGGCCACAGGAATTGTGCTCCAGAATTGCCAAATCACCGCAGAGAAGGAATTGTTTCCAGTTAAAGACCAACTGAAATCATATTTGGGTAGACCATGGAAAGAATATGCTAAGACAGTGGTTATGGAATCTAACATTGATGATTTTCTTGCACCAGAAGGGTGGACTCCATGGGAAGGAAATTTGTATCTTAATACATTGTATTATGCTGAATATGCTAATACTGGACCTGGTGCTAATCTTAATGGAAGGATTAAGTGGAAAGGTTATCATCCTAACATTAATAAGAATGAAGCTGCTCAATACACTGCTGAACAATTCCTTAAAGCTGGACCTACTGGAAGAGCTGATGATTGGTTGAAGGCAACTGGTATTCCTTATACAATTGGATTTGAAAAACCATGA 1755 0.4228 MSGKVIVSGVSIILVVGVAIGVVCVVNKTGNDPALAAHQKNVQSICSATEDQKLCQDTLGAAKPTNSSDPTAYLAAAVEASAKSVILALNMSDQLKVEHDNGEPGIKMALDDCKDLMQFALDSLESSANLVRDNNVQAIHDQTPDFRNWLSAVISYQESCTEGFNNGTSGEEQVKKQLQTESLDKMEKLTGITLDIVSSMVHLLQSFDLKLDLNPSSRRLLEVNELDNEGLPKWFSAADRKLLAKVGGGGAAAAGGGGGAPAPNAVVAKDGSGQFKTVKEAIDSYPKGFQGRFIIYVKAGVYDEYITVPKTAINILMYGDGPTKSIITGHKNFVDGVKTMQTATFANVAPGFIAKSIAFENTAGWEKHQAVAFRNQGDMSAFFDCAMHGYQDTLYVQANRQFYRNCEISGTIDFIFGASPTLIQNSKIIVRKPGPSQFNTVTADGTKQRNMATGIVLQNCQITAEKELFPVKDQLKSYLGRPWKEYAKTVVMESNIDDFLAPEGWTPWEGNLYLNTLYYAEYANTGPGANLNGRIKWKGYHPNINKNEAAQYTAEQFLKAGPTGRADDWLKATGIPYTIGFEKP* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2303 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 200 IPR035513 -
Tpr1g2303 584 SUPERFAMILY Pectin lyase-like 260 580 IPR011050 -
Tpr1g2303 584 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Tpr1g2303 584 Pfam Pectinesterase 264 559 IPR000070 GO:0030599|GO:0042545
Tpr1g2303 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 198 IPR006501 GO:0004857
Tpr1g2303 584 Gene3D - 260 581 IPR012334 -
Tpr1g2303 584 SMART PMEI_2 37 196 IPR006501 GO:0004857
Tpr1g2303 584 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Tpr1g2303 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Tpr1g2303 584 PANTHER PECTINESTERASE 3 581 - -
Tpr1g2303 584 CDD PMEI-like_3 44 200 - -
Tpr1g2303 584 PANTHER PECTINESTERASE 3 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2303 Tpr-Chr1 25892965 25896568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2303 5 581 Carbohydrate Esterase AT3G05610 41.197 4.92e-140 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2303 K01051 - gmx:100775246 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0413 6 3386979 3389203 Tpr1g2303 1 25892965 25896568 PCT
Tpr1g2303 1 25892965 25896568 Tpr6g0415 6 3395736 3397815 PCT